Janthinobacterium sp. 17J80-10: EKL02_16165
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Entry
EKL02_16165 CDS
T05896
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jaj
Janthinobacterium sp. 17J80-10
Pathway
jaj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jaj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EKL02_16165 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jaj03021
]
EKL02_16165 (rpoD)
Transcription machinery [BR:
jaj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EKL02_16165 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4611
Motif
Other DBs
NCBI-ProteinID:
QAU35573
UniProt:
A0A410UW53
LinkDB
All DBs
Position
complement(3633368..3635950)
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AA seq
860 aa
AA seq
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MANAMKKSATKTTAKTPIKAAKNTKATKPVAAKSAAKPAKKAAPAKTAAAKGKTTSVEKS
VKSPAKTVAKAAAKTLTKAAPAPSKVTEKAAPKSAAKPAAAKPSSTGAAKAVPETAKAPV
TKKTEVKSTGKPSKAAKAESTATILVTSAAPVSQTTDAAALAAIDTSGYVLPGVKVPGRR
GRKPKDFQPENDEIAALNAVERAELKAADKARAKDRKAKEKALLKEAFSSDVEASEEELE
QRRQKLKTLIKLGKDRGFLTYSEINDHLPENIVDPEAIEGIIGTFNDMGIAVYEQAPDAE
TLLLSDAVANVASDEDTDAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEI
AKRIEEGLKDMIQAISACPTTIAEILAAAERIEGEEMKVDEIVDGMVDMNAADTVVAAAP
AAEEEDEDDEDEDEEDEEEEEGNSAGGAAGFSAEQLEQLKRDALATFANISSQFDKMRKA
FEKEGYNSKPYVKAQETISSDLLGLRFTAKFVEKLCDTLRGQVDEVRHIEKQILDVAVNR
CGMPRAHFIKVFPGNETNLDWIDGEVEGNHSYSAVLGRNVPTIKELQQKLIDLQARVVLP
LPDLRNINKKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GAEPDPATLALKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDA
ALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGS
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgcaatgaagaagtccgcgaccaagaccaccgcgaaaaccccgatcaaagcc
gcgaagaataccaaggctaccaagcctgttgccgccaagagtgcggccaagccggcaaaa
aaggcggcgcccgccaagactgcggcagccaagggtaagactacgagcgttgaaaaaagc
gtcaaatcgcctgcgaaaactgtcgcaaaagctgctgccaaaaccttgacgaaggccgcg
ccggccccatctaaggtgacggaaaaagccgcgccgaaatcggccgcgaagcccgctgca
gcgaaaccttcatccacgggtgctgccaaagcagtgcctgaaacagcgaaagcccctgtg
accaagaaaaccgaagtgaaatcgaccggcaagccgagcaaggccgccaaagcggaatcc
acggcgaccatcctggtgacgtccgccgcaccagtcagccagacgaccgacgctgcagca
ttggctgcaatcgatacttccggttatgtcttgccgggtgtgaaggtgcctgggcgccgc
ggtcgcaagccgaaggacttccagccggagaatgacgaaatcgccgcgctgaatgcggtc
gagcgcgctgaactcaaagctgccgacaaggcccgcgccaaggaccgcaaggccaaggaa
aaggccttgctgaaagaagcgttttcgtcggacgtcgaagcctccgaggaagagctcgag
cagcgccggcaaaagctgaaaaccctgatcaagctgggcaaggaccgcggcttcctgacg
tattcggaaatcaacgatcacttgccggaaaatatcgtcgatccggaagcgatcgaaggc
atcatcggcaccttcaacgacatgggtattgccgtgtacgaacaggcgcccgatgccgag
accctgctgctgtcggacgccgttgccaatgtcgcctccgatgaagataccgacgccgcc
gccgaagctgcgctgtccaccgtcgactccgacttcggtcgcaccaccgaccccgtgcgc
atgtacatgcgcgaaatgggctcggtcgaactcctgacgcgcgaaggcgaaattgaaatc
gccaagcgcatcgaggaaggcctgaaagacatgatccaggcgatctccgcctgcccgacc
accatcgccgaaattctcgcggctgccgagcgcatcgagggcgaagaaatgaaggtcgat
gaaatcgtcgatggcatggttgacatgaacgccgccgacaccgtggtcgccgccgcgcct
gctgcggaagaagaagacgaggacgacgaggacgaggacgaagaagacgaagaggaagaa
gaaggcaacagtgccggtggcgctgcgggcttctcggccgaacagctcgagcaattgaaa
cgcgacgcgctcgccactttcgccaacatctcttcccagttcgacaagatgcgcaaggcc
tttgaaaaggaaggctacaactccaagccttacgtcaaggcgcaggaaaccatttccagc
gacttgctcggcttgcgttttaccgccaagttcgttgaaaaattgtgcgataccctgcgt
ggccaggtcgatgaagtgcgccatatcgaaaagcaaatcctcgatgtggcggtgaaccgc
tgcggcatgccgcgcgcccacttcatcaaggtcttcccgggcaatgaaaccaacctcgac
tggatcgatggtgaggtcgaaggcaaccacagctacagcgcggtgctgggccgtaacgtg
cccaccattaaggaactgcagcaaaagctgatcgacctgcaggcacgcgtggtgctgccg
ctgccggacctgcgcaacatcaacaagaaaatggctgccggcgaaatgaaagctcgcaag
gccaagcgcgaaatgaccgaggccaacctgcgcctggtgatttcgatcgccaagaaatac
accaaccgcggcctgcaattcctcgacctgatccaggaaggtaacatcggcctgatgaag
gccgtcgacaagttcgaataccgccgcggctacaagttctcgacctatgccacctggtgg
atccgccaggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgtatcccggtg
cacatgatcgaaaccatcaacaagatgaaccgcatctcgcgccagattctgcaggaaacc
ggcgccgagccggatccggcgaccctggcattgaagatggaaatgccggaagataagatc
cgcaagatcatgaagatcgccaaggagccgatctccatggaaacgccgatcggcgacgac
gacgattcgcacctgggcgacttcatcgaagacaacaataccctggcaccatccgatgca
gcgctgcacgcttccatgcgcggcgtggtcaaggatgtgctggattcgctgacgccgcgt
gaagccaaggtgctgcgcatgcgcttcggcattgaaatgtcgaccgaccataccctggaa
gaagtcggcaagcagttcgacgtcacccgcgagcgcattcggcaaatagaagccaaggcc
ttgcgcaagctccgtcatccgtcgcgctccgacaagctcaagagcttcctggaaggcagt
tga
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