Jatropha curcas (Barbados nut): 105642128
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Entry
105642128 CDS
T03922
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105642128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105642128
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105642128
mRNA degradation factors
5'-3' decay
Decapping complex
105642128
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
DUF445
Motif
Other DBs
NCBI-GeneID:
105642128
NCBI-ProteinID:
XP_012082220
UniProt:
A0A067JYI4
LinkDB
All DBs
Position
Unknown
AA seq
1464 aa
AA seq
DB search
MASPGNPPNQGGGGGGGAFDVNKLFKPSSSPMNMNLNNMNMMQPSPQQQQQPPLSPSHSN
PATGNLTTSPSFPLPSSLPSSSPPYLTPSSSYPPPTGPYHPYNPHYLSPYPPPPPPQLQQ
HHNQFLTNMHHQNRPQPISSFPSPSAAASASSTPPSPPPFSPNNPNPGGVLMDILNNQNQ
QQQQPPPSNLTMPFSSPSSSSAVSSFNAPAPSAPPVSLASPTHQLQQPSPTPMRMLSSKL
PKGRHLIGNHVVYDIDVRLQGEVQPQLEVTPITKYVSDPGLVLGRQIAVNRNYICYGLKP
GAIRILNINTALRSLLRGHNQKVTDMVFFAEDVHLLASACIDGRVFIRKISEGPDEEEKP
QIFERIVLALQIIVEGGPVHPRVCWHPHKQEILMVAIGNHILKIDTLKVGKGEGLSAEKP
LNCPIEKLTDGVQLAGKHDGEITELSMCQWMTTRLASASADGTVKIWEDRKAVPLAILRP
HDGNPVNSVAFLTAPHRPDHIVLITGGPLNQEVKIWASAGEEGWLLPSDAESWQCSQTLT
LKSSAESSADGAFFNQVVALPRAGLFLLANAKKNAIYAIHIEYGSCPAATRMDYIAEFTV
TMPILSLTGTSDVLPNGEHIVQVYCVQTQAIQQYALDLSQCLPPPLENMELEKTESNVSR
AFDAANSDGSNIMESSHGSKATKVSIGKGTSTPPMVSSVSESAPKASQPESLVSSEITSL
PDIAASGVESKASALPSHNSIENLNTMSPPLPLSPQLSQTLSGFQGPSNNAESSMQLNDH
VVDQPVLDYLVEHRMETAKDNLADSPSSGDNLGKGEKNIAQTDISVVPEPPVIFKHPTHL
ITPSEILSRATSSSENFQISQGLNIGEAKVQDVVVNNDAESVELEVKVVGETGTPQNNAF
DLPREFHVTVPEKKEKSFYSQASDLSLQMARDCCVEAYSFAGIRQSGEVGVAEVPERPSN
NGEDEEQDVRKDIPGKIRELETPMVVPQSAAPSAKAKKQRGKSSQLLGLSSPSPSPFNST
DSSNEPGCSSGAQSSDAALSQLSAMQDMLDQLLSTQKDMQKQMNMMISVPISKEGKRLEA
SLGRSIEKVVKANTDALWARFQEENTKHEKLERERMQLLTNLITNCVNKDLPSTLEKTLK
KEIAAVGPAVARAITPTLEKSISSAITESFQKGVGEKAVNQLEKSVSSKLEGAVARQIQS
QFQTSGKQVLQDALRSSLEAAIIPAFEMSCKSMFDQIDATFQKGLINHITATQQQFDSTH
SHLAIALRDAINSASSITQTLSGELAEGQRKLLAIAAAGANSKVGNPSLSNGPLAGSHEM
AEAPFDPTKELSRLITERKFEEAFTVALQRSDVSIVSWLCSQVDLQGILSMVPLPLSQGV
LLALLQQLACDISNDTSKKLAWMTDVAVAINPADPVIAVHVRPIFDQVYQILSHQRNLPI
TSASESASIRLLMHVINSVLMSCK
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atggcttcacctggtaatcctccaaatcaaggaggtggaggcggaggtggtgcttttgat
gtgaataagctgttcaagccatcttcgagccctatgaacatgaatttgaataatatgaat
atgatgcaaccatcaccacagcaacagcagcagcctcctctcagtcctagccactcaaac
ccagctactggcaatctcacaacttctccttcctttcctcttccttcttcactcccttcc
tcttctcctccttatttgactccgtcttcctcttatcctcctcccaccgggccttaccac
ccttataatcctcactatctctctccttatccacctccacctcctccacaacttcaacag
catcacaatcagttcctcactaacatgcaccaccagaatagacctcagcccatttcttct
tttccttctccttctgctgctgcctctgcttcttccactcctccatcgcctcctccattc
tcgcctaataaccctaaccccggtggtgtattgatggacatcctcaacaatcagaatcag
cagcagcaacaacctcctccctctaatctgactatgccattctcttcgccatcttcttca
tcagctgtatccagcttcaatgctcctgccccttctgctccgcctgtcagtttggcatct
ccaactcatcagctgcagcagcccagcccaactcctatgagaatgctcagcagcaagctc
cccaaagggcgccatttaattggcaaccatgttgtgtatgatattgatgtcagattgcaa
ggagaggtgcagccacaacttgaagtcactcccattaccaagtatgtctctgatcctggc
cttgtacttggtcgtcagattgcagtcaatagaaattacatttgctatggactcaagcct
ggagctatccgcattctcaatatcaatactgccttgagatctttgcttcgtggtcataat
cagaaagtaacagatatggtgttctttgctgaggatgtccaccttctggccagtgcatgc
attgatgggcgggtattcatacggaagatcagtgaggggccagatgaggaagagaaacct
caaatttttgaaagaattgttcttgcccttcagataatagtagagggagggccggtgcat
ccacgagtgtgttggcatcctcacaaacaagaaattttgatggttgcaattggaaatcat
atcctaaaaattgatactcttaaagttggaaaaggtgaagggctttcagcagagaaacct
cttaattgtcccattgaaaagttaactgatggggtccagcttgctggtaagcatgatggt
gaaattactgagttgtcaatgtgtcaatggatgaccacccgtttagcttcagcttcggca
gatggcacggttaaaatttgggaagatcgtaaggcagtgccactagcaatattgagacca
catgatggtaaccctgtaaattctgtggcattcttgactgcccctcaccgccctgatcat
attgtccttatcactgggggcccactaaaccaggaagtgaagatttgggcctctgcaggt
gaggagggttggcttttgcccagtgatgctgagtcatggcagtgtagtcagacattgacc
ttaaagagttctgctgaatctagtgctgatggtgcattttttaatcaagttgtagcactt
ccccgtgctggcttatttttgttggcaaatgccaagaagaatgctatttatgcaatacat
attgaatatggatcttgtccagctgcaacccgcatggattacatagctgagtttactgta
acaatgcctattttgagtcttactggaactagtgatgttttgccaaatggagaacatatt
gttcaggtttattgtgtccaaacacaagctattcagcagtatgcattggatttgtcacag
tgcttgccaccaccactggagaacatggagttggagaaaacagaatccaatgtttctcgt
gcttttgatgctgctaattctgatggttccaatatcatggaatcatctcatggaagcaaa
gcaacaaaggtttccataggtaaagggacttccacaccacctatggtgtcgagtgtttct
gaaagtgctcccaaagcaagccaacctgaaagcttggtttcttctgagatcactagctta
ccagatattgctgcttcaggtgtagagtctaaggctagtgctttgccttctcataacagt
atcgaaaatctcaataccatgtctcctccacttcctttgagtccacagttatctcaaacg
ttgtcgggtttccaaggtccatcaaataacgctgaatcgagcatgcaactcaatgatcat
gtagttgaccagcctgttctggattatttggttgagcatagaatggaaacagcaaaggac
aacttagctgatagcccctcctcaggtgacaatctggggaagggtgagaaaaacattgca
caaactgacatctccgtagttcctgaacctcctgtaatttttaaacacccaacccatctt
ataaccccatcagagatactatcaagggctacctcatcttctgagaattttcaaattagt
cagggcctgaatataggagaggcaaaggtgcaggatgtggttgtcaacaatgatgcggaa
agtgttgagttagaggttaaagttgttggcgagacaggaacccctcagaataacgccttc
gacttgcctagagaattccatgtcactgtgccagagaagaaggaaaaatctttttactct
caggcttcagatctaagtcttcagatggccagagattgttgcgtggaagcttatagtttt
gctgggattcggcagtctggtgaagttggtgttgctgaggtaccagaaagacctagtaat
aatggtgaggatgaagagcaagatgtgagaaaagacataccaggtaagattcgtgaactg
gaaacccccatggtagttccacagtccgcagccccatctgcaaaagcaaaaaagcagagg
ggaaaaagctctcaattattgggtctgtcttccccttccccaagtcctttcaactctacg
gattcatccaatgaaccaggttgcagttcaggtgcccaatcaagtgatgctgctctatct
caattgtcagcaatgcaggatatgcttgatcagttactgagtacacagaaagacatgcaa
aagcagatgaatatgatgatttctgttccaatttccaaagaaggtaaaaggctagaggca
tccttggggcggagtattgagaaagttgttaaggctaatacagatgctctatgggctcgt
tttcaagaagaaaacacaaagcatgaaaagttagaacgggaacgtatgcagctgttgaca
aatttgattacaaattgtgtaaataaggatttgccaagcactttagagaaaactttgaag
aaggagatagctgcagttggacctgctgtagctcgtgcaattactcccaccctggagaaa
agcatatcatcagctattacagagtcattccagaaaggggtgggggagaaggcagtgaat
caactagagaaatcagtcagctcgaaacttgaaggtgcagtagccaggcaaatccaatca
caatttcaaacttctggaaagcaagttcttcaggatgcactaagatctagtttggaagct
gcaattattcctgcatttgagatgtcatgcaaatctatgtttgatcaaattgatgccaca
tttcagaaaggacttattaatcatataactgccactcaacagcaatttgactcaacacat
tctcacctggccattgctcttagggatgctatcaattcagcatcgtcaatcactcagact
ctaagtggagaattagctgagggccaacgcaagctattagctattgcggctgcaggtgca
aactcaaaagttggaaatccgtctttgagtaatggaccattagctggttcacatgagatg
gctgaagcacctttcgatccaacaaaagaattgtccagattgataactgaacgtaaattt
gaggaagcattcacagtagcgcttcagagaagtgatgtgtcaatagtttcctggttatgt
tctcaggttgatctacaggggattttgtccatggtaccactacccttaagccaaggagta
ctactggctcttctacagcaattggcttgcgatatcagcaatgatacttctaaaaagctg
gcatggatgacagatgtggctgttgctataaaccctgcagatcctgtgatcgcagtgcac
gtgagaccaatatttgatcaggtctatcagatattgagccatcaaaggaacctgcctatt
acatctgcttcagaatctgccagtatacgtcttcttatgcatgttataaattctgtgcta
atgagctgtaaatga
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