Jatropha curcas (Barbados nut): 105644707
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Entry
105644707 CDS
T03922
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
jcu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105644707
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105644707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105644707
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105644707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
105644707
NCBI-ProteinID:
XP_020539164
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MADEQIDYEDEEYGGAQKMQYQGSGAIPALAEEEMGEDDEYDDLYNDVNVGENFLQMHQS
EVPPPTTSISSGGFQAQNVNEPRVGTGGSQGLNIPGGVVEGKYSNVETHFPEQKEVPMGA
KGAEMGSVGYPDGSVTQKGRVMEVTHDSQARNIGFQGSSSVPSNVVVDPSDMSRKIPNEP
APVPNTSISGPRGIQQLPGNQISINIDVNRPGMNENQIRPPVENGSTVLFVGELHWWTTD
AELESVLSQYGKVKEIKFFDERASGKSKGFCQVEFYDAAAAAACKEGMNGHVFNGRPCVV
AFASPQTLKQMGASYMNKTQGQPQTQNQARRPMNDGVGRGGNMNYQGGDAGRNFGRGGWG
RGGQGMMNRGPVGGGPVRGRGGTMGAKNMVGGGVGVGNGANGGGFGQGLAGPAFGGPVAG
MMPPQNMMGGGFDPTYMGRGAGYGGFAGPGFPGMLPSFPAVNAMGLAGVAPHVNPAFFGR
GMAPNGMGMMGPSAMDGPNAGMWSDTSMGGWGEEPGRRTRESSYGGDDGASEYGYGEVNN
EKGTRSSAASREKERAPERDWSGNSDRRHRDEREHDWDRSEREHREHRYREEKDSYREHR
RRERDSGYEDDWDRGQSSSRSRSRSRAVPEEDYRPRSRDADYGKRRRLPSD
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaacaaatagattatgaagatgaggagtatggaggggctcagaagatgcaa
tatcagggaagtggtgccatacctgcccttgcagaggaagagatgggggaagatgatgag
tatgatgatctctataatgatgtcaatgttggagagaatttcctgcagatgcaccaatct
gaggttccgccacccactactagtattagcagcggaggattccaagcacagaatgttaat
gagccaagagttggaacagggggttcacaaggactaaacatccctgggggtgttgttgaa
gggaaatattcaaatgtggagacacattttcctgaacagaaagaagttcccatgggtgct
aagggggctgaaatgggatctgttggctacccagatggatctgttacacaaaaaggaagg
gttatggaggtgactcatgattctcaggcccgaaatataggatttcaaggatcatcatca
gtgccctccaatgttgtggtagatccttctgacatgagtagaaaaattcccaatgagcct
gcacctgttccaaatactagcatcagtggtccaagaggaattcaacagttgccaggtaat
caaattagtatcaatatagatgtcaatcgtcctgggatgaatgaaaatcaaatccggcca
ccagtagaaaatggttcaactgtgttgtttgttggggaattacactggtggacaaccgat
gcagagcttgagagtgttttatctcaatatggaaaggtgaaggagatcaagttctttgat
gagagagctagtggtaaatctaaaggcttttgccaagtggaattttacgatgcagctgct
gctgctgcatgcaaagagggaatgaatgggcatgttttcaatggacgaccttgtgttgtg
gcctttgcttctccacagacattaaagcagatgggggcttcatacatgaacaagacccag
ggccaacctcagacacaaaatcaagcaaggaggcctatgaatgatggggtgggaaggggt
ggtaatatgaattatcaaggtggagacgctgggaggaactttggaagaggtgggtgggga
cgaggtggacagggaatgatgaatagaggtcctgtgggtggaggaccagtgaggggaaga
ggaggaactatgggcgccaagaatatggttggaggtggtgttggagtaggaaatggtgcc
aatggtggaggctttggacaaggcctggcaggtcctgcatttggtggacctgttgctggt
atgatgcctccacaaaatatgatgggaggtggatttgatccaacttatatgggccgaggg
gctggttatggaggctttgctggccctggttttcctggcatgcttccatcatttccagca
gttaatgcaatgggacttgcgggagtggctcctcatgtcaacccagccttctttggccgt
ggaatggcacctaatggtatgggaatgatgggtccctctgcaatggatggaccaaatgct
ggaatgtggtctgatacaagcatgggtggatggggagaagagcctggcaggagaacaagg
gagtcaagctatggtggtgatgatggagcttctgaatatggctatggagaggtgaataat
gagaagggaacacgttccagtgctgcatctagggaaaaggagcgggctcctgaacgtgat
tggtctgggaactctgataggaggcatcgtgatgagagggaacatgactgggacaggtca
gaaagagagcacagggagcacagataccgggaagaaaaagatagttacagagagcatcgg
cgaagagagcgtgactctggttatgaggatgactgggatagagggcaatcttcttcaaga
tctcggagcaggtcccgagctgtgcctgaagaagattacaggcctcgatcaagggatgca
gattatggaaagaggagacgcctaccatcagactga
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