Jatropha curcas (Barbados nut): 105647129
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Entry
105647129 CDS
T03922
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03020
RNA polymerase
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105647129
09124 Replication and repair
03420 Nucleotide excision repair
105647129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105647129
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105647129
Enzymes [BR:
jcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105647129
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105647129
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105647129
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_7
RNA_pol_Rpb1_6
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
105647129
NCBI-ProteinID:
XP_037492740
LinkDB
All DBs
Position
Unknown
AA seq
1834 aa
AA seq
DB search
MFPLFRGFSIEKDFLGEISLNQTFISVPFLELILGLVWLLVSSQWIQGPLSPADSSNVRV
RMVQFGILSPDEIRQMSVVQVEYSETTERGKPKPGGLSDPRLGTIDRKMKCETCNANMAE
CPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADFNCSKILADEEDHKFKQALK
IRNPKNRLKRILDACKNKTKCEGGDDIDVQGQDTEEPVKKSRGGCGAQQPKDVVAQQAKN
FLLKRGWGTCTIHSEFASLLQFHDATYFDNELPGQARYTKDLGGLLNSICRWLKAKESRI
RGNLMGNVVDFSARTVITPDPNINXDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP
HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVEERHLNDVTFVLFNRKPSLLK
MSIMGHXIRLLPYSTFRLNLSVTSPYYADFIGDEMNMQFLNHWXLSSKVLELMMVPKCIV
SPQSNGRVMGLFRITXFRCRKITKGDHFHREDVFXNILMCGEDFDGXVPAPAILKPRPFG
QENKFFNLTSFQRQINLNXTAAWHNDTGLEKVSLLQENTLVSNRKKESYYLAKTLCKKIX
GTLTGSLIHVIWEEVVQMQLANFLRAXLQWLVNYWLLQKWFYQLALEDTNCLMQLRWRKS
NETIFKKQKKXCEGNLFRKASNKETKPEPGRTMMESFENQVNQTLNTARDXCWKQCQKSL
SESTTSRPWVTAGSKGVSLIYLRWTCLCGGQQKLFKGKAYTVYGFIDRTLPHFTRMDYGP
ESRGFVENSYLRGLPPRSFFFPHAMGGREGLIDTVSRLLRDGYIQGRLCLKPWRILWLID
GTVRNSLGDLFQFLYGEDGMDAVWIXKSQNXFIKKMKKSEFDRVFRLNSMMKIWERLLHD
CRDSHWRILKNIRELRDVFDCXISKTXNGXCQLRKRLQLQVDNSWPLPVNLHRLIWNAQK
TFKVDTRRPSDIHPMEAVKLVVSXTERLKVVPGGLITEXRSPKECTLFFGLCCFVALIAN
KGLLEEYRLLEKPIXWLLXIESRFLQSFGLAPGEMIXCVAAQSIGEPCHKMTLNTFHYAG
VSAKNCLLVFPRLREIINVAKKIKTPSLSVXLTPECNAQRRRLRLFPIVLWNYTYSQECY
QLPEVWYTSSPMSTIIEEDAEFVNHLXNADNEELHRKKFSPWLLRIELNREMMIDXKLNM
ADIAEKINLELDDDLTCIFNDDQCKKLILRIRIMNDXGSEGRLNDESDXGCMFSWKKIES
NMLTEMLSVVFPDIKTASLLNIRXTISKFDXNDGFKTVEEWMLDTEVVNLLAVMCNENVD
ARRTQAITXLKLLKFFGTXGCSTLLLDELRSLYIFRWISMLNYHIWHTDVITMGHYRGHL
MAITRHGINRNDTGPLMRCSFEETVDILLMAAVYAESDYLRGXTGKIMLGQLXPIGTGSF
PYISMMNMLKNAIELQLPVIWMAWAFGMTPARSPVSGTPYHEGKLMSLSYLLSPNLASQP
HXLMLSFSSPAQFSPYVGGIAFSPASSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSP
TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPVYSPTSPAYSPSSPAYSPTSPSYSLTSPSYSRTSPSYSPTSPSYSPT
SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYNPQSAKYSLSMAYSPSSPRLSPSSPYSP
TSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGAPDYSPSSPQYSPSAGYSPSAPGYS
PSSTSQYTPQTSTEDDRNNKGDRNARDNDDRSSR
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctttgtttagaggtttctcgattgagaaggattttctcggagagatcagtttg
aatcaaactttcatttcagttccatttctcgaattaattctagggttagtgtggttatta
gtaagctcgcaatggatacaaggtcccttatcgccggcggacagttccaatgtccgtgtc
cgtatggtccagttcgggatacttagccccgatgagattaggcaaatgtctgtggtacaa
gttgagtacagtgaaactacagagaggggcaagcctaagccaggtggcttgagtgatccg
agactgggtacgattgacaggaagatgaaatgtgagacttgtaatgcgaatatggctgaa
tgcccaggtcattttggtcacctggagttggcgaagccaatgtttcatattggtttcatg
aaaactgtattgagcatcatgcgatgcgtatgtttcaactgttccaagattttggctgat
ttcaactgttccaagattttggctgatgaggaagatcacaagtttaagcaagctttgaaa
ataaggaatcccaaaaacaggctgaaaaggattcttgatgcctgcaaaaataagactaaa
tgtgaaggtggtgatgatattgatgttcaaggtcaagatactgaagagccagtgaaaaag
agtcgaggtggatgtggtgctcagcagccaaaagatgtggttgctcagcaagcaaaaaac
tttctattgaagagagggtggggcacctgcacaattcattcagagtttgccagcttgttg
cagtttcacgatgccacatattttgacaatgaattgcccggacaggcaagatacacaaaa
gatctgggaggactattaaattcaatttgtaggtggcttaaggccaaggaaagccgaatt
aggggtaacctgatgggaaacgttgtagatttttctgcccgtacagtcataacaccagat
cccaatatcaatnntgatcaactaggtgtgccttggagtattgcattgaatctcacctac
ccagaaactgtgactccatataacattgaaaggttgaaggagcttgttgagtatgggccg
catcctccacctggtaaaactggtgcaaaatatatcataagggatgatggccaaagactt
gatcttcgttatttgaagaaaagcagtgatcatcatttggagcttggttacaaggtggag
gagaggcatttgaatgatgtgacttttgtgctcttcaatcgcaaacccagtctcttaaaa
atgtcaattatgggacattgaatcagattattgccatactctactttccgtttaaacttg
tctgttacttcaccatattatgctgattttattggtgatgaaatgaacatgcagttcctc
aatcattggnngctaagtagcaaggtattggagctgatgatggtgcctaagtgcattgtg
tcgcctcaatcaaacggccgagtgatgggattgttcaggatcaccnnttttagatgccgg
aagatcactaagggggaccactttcatagagaagatgtcttcnataatatactgatgtgt
ggggaggattttgatggannagttcctgctcctgcaatcctgaagccacgaccttttgga
caggaaaacaagttttttaatcttacttcattccaaaggcagataaatcttaattaaact
gctgcatggcacaacgatacaggattagaaaaggtatcattactccaggagaatactcta
gtttcgaatagaaaaaaggagagctactatctggcaaaaactctttgcaagaaaatcnnt
gggactcttactggaagtcttattcatgtcatttgggaagaggttgtccagatgcagctc
gcaaattttttgcgggcctaacttcaatggcttgtgaactattggcttttgcaaaaatgg
ttttaccaattggcattggaagatacaaattgcttgatgcagctacgatggagaaaatcc
aatgaaactattttcaaaaagcaaaaaaaatgatgtgaaggaaacttatttaggaaggct
tcaaacaaggaaactaaacctgaacctggacggactatgatggaatcatttgaaaaccaa
gtgaatcagactttgaatacagctcgtgattgatgctggaagcagtgccaaaagagtttg
tctgagagtacaacctcaaggccatgggttactgcaggatctaaaggagtttcattaata
tatctcagatggacctgcttgtgtggcgggcagcaaaaattgtttaagggtaaggcttat
accgtttatggttttatagatcggacgttgcctcactttacaaggatggactatgggccg
gaaagtcgtgggtttgtggagaattcatatttgcgtgggttaccccccaggagcttcttt
tttccccatgctatgggtggtagggaaggtcttatcgatactgtcagtagattgctgagg
gatgggtatattcagggccggctgtgtttgaagccatggaggatattatggttaattgat
ggcactgttaggaattcactgggagatttattccagtttctctatggggaagatggtatg
gatgctgtctggatttagaaatctcagaactgattcattaaaaaaatgaagaaatcagaa
tttgacagggtcttcagattgaactcgatgatgaaaatttgggaacgccttctacatgat
tgccgggattcacattggaggattttgaaaaatatccgagaattgcgcgatgtatttgat
tgctgaatttcaaaaacttgaaacggataatgccaactcagaaagagattgcaactacag
gtagataattcttggccattgcctgttaacctccataggcttatttggaatgcacagaag
actttcaaggttgatacgagaaggccctcagacattcatccaatggaagctgtaaagctg
gttgtaagcnntacggagagattaaaagttgttcctgggggattgatcactgagtagcga
agcccaaaagaatgcactcttttctttggattatgttgcttcgtagcactcattgccaat
aaagggttgttggaggaatacaggctactcgagaagcccatttgatggttattgtagata
gaatcccggttcttgcagtcatttggtctagcgcctggggaaatgatangttgtgttgct
gcacagtccattggagagccttgccacaaaatgactctcaatactttccactatgctggt
gttagtgcaaagaattgtctcttggtgtttcccaggctaagggaaattattaatgttgct
aaaaagatcaaaacaccttctctttctgtcntactgacaccagaatgtaatgcacaaagg
agacggctaagactgtttccaattgtgctctggaattacacttactctcaggagtgttat
cagctaccagaagtatggtatacgtcaagtcctatgagtaccataattgaagaggatgct
gaatttgtgaatcatttatgaaatgccgacaatgaagagttgcaccggaaaaaattctct
ccttggttgctacgtatagagttgaaccgtgaaatgatgattgattagaagcttaacatg
gctgacattgctgagaaaatcaatcttgaattggatgatgatttgacatgtatatttaat
gatgaccaatgcaaaaaactgatcctccggatacgtatcatgaatgattgaggctccgaa
gggcgattgaatgatgagtctgactgaggttgtatgttttcctggaaaaagattgagagt
aacatgctgacagaaatgctctccgtggtattcccagatataaaaacagcgtctttatta
aacattaggtaaacgattagcaaatttgatnggaatgatggatttaagacagtagaggaa
tggatgcttgatacagaggtggtcaatctcctggctgttatgtgtaatgaaaatgttgat
gcaaggaggacacaagcaatcacttgattgaagttattgaagttctttggtacttgaggc
tgttcgacgctccttctagatgagttgaggtcgctttatatctttcgatggatctctatg
ttgaattaccacatctggcatactgatgtgataaccatgggacattatcgtggccatttg
atggccatcacccgccatggtatcaatcggaatgacaccgggccattgatgaggtgctcg
tttgaagagactgtggacattcttctgatggctgctgtgtatgctgaatcagattacttg
aggggtntcactggaaaaataatgctcggtcagctcnacccaattggaacaggaagcttt
ccttatatctcaatgatgaacatgttgaagaatgctatagaacttcagcttcctgttata
tggatggcctgggcttttggcatgactccagctcgttctccagtatcaggaactccttac
catgaggggaaattgatgtctctgagttacttgctgagcccaaatctcgcctctcagccc
cattaactgatgctcagtttttcttcaccagctcagttctcaccatatgttggtggaatc
gctttctctcctgcgtcatctcctggctacagcccatcatctccgggctacagtccatct
tcccctggatatagtcctacatctcctggatacagtcctacctcacctggttacagccct
acctctcctggatatagcccaacttcaccgacctacagccccagttctcctggctatagt
ccaaccagtcctgcctattctcctacaagtccatcatattccccaacttccccaagttat
agccccacatctcccagctacagccccacatctcccagttacagtcccacatctcccagt
tacagtcctacatctccaagctacagccctacttctccagtttatagtcctacctcacca
gcatatagtccctcttctcctgcatacagtcccacctcaccgtcatacagcctgacttct
ccttcctatagccgcacatcaccttcttatagtccgacttctccatcttatagtcctaca
tctccatcatatagcccaacttcacctgcatatagccccacatcccctgggtacagcccc
acctctccgagctatagccctacttcaccaagctataatcctcagtcagctaaatacagt
ctttcaatggcatactcaccaagcagtcctagattatcaccatccagtccttacagtcct
acatctccaaattatagcccgacatcaccatcgtattccccaacctccccatcatattcc
ccttcaagtccaacatatagtcctagcagcccatataattctggagcaccagattatagc
ccaagttctccacaatatagtcctagtgctgggtactcgccaagtgcacctgggtactca
ccatcatcaaccagccaatacactcctcaaacgagtactgaggatgacaggaataacaaa
ggggacaggaatgcaagggataacgatgacaggagcagtcgatga
DBGET
integrated database retrieval system
