Juglans regia (English walnut): 108985299
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Entry
108985299 CDS
T05245
Name
(RefSeq) uncharacterized PE-PGRS family protein PE_PGRS54-like
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
jre
Juglans regia (English walnut)
Pathway
jre03015
mRNA surveillance pathway
jre03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108985299
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108985299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jre03019
]
108985299
Messenger RNA biogenesis [BR:
jre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
108985299
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
108985299
NCBI-ProteinID:
XP_018813098
UniProt:
A0A2I4E121
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Position
2:complement(37107216..37111417)
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AA seq
736 aa
AA seq
DB search
MDEGSGGFGEGADQMDQFHRNEAISAVADEGFLGEEDEDYEDLYNDVNVGEGFLQSLRKG
EELGLRNEEEENKKKESLPRAAPDQHAVSIPGVGEGSGNGGGGDVGEVRLSGFQSDQGFR
GNVVKGTVGSGSGGIRVELGQGGITSKMNEVEEQSGNNITSGVQGIVGGQQSHGGGAVNV
GSVGNGALVRHTGVGSVGNGALVRHTGGGGNVNGIGGDGVANSGGSGVGVGGGGGAGGIG
GVGGGGTTLFVGDLHWWTTDAELESELCKYGRVKEVKFFEEKASGKSKGYCQVEFYDPAA
ATTCKEGMNGHMFNGRPCVVAFASPFSVKRMGEAQVNRNQQMTQAAQARRGPNDVPGKPS
GSNNGSSGNYQGGDNNNNRGYGRGNWGRGNAQGGMGNRGPAGPMRNRGGGMGGMGGRGIM
GNGGNGFGQGIGATPPLLHPQSMMGQAFDPAFGGHMGRMGGYGGFPGAPTPPFSGILSSF
PHVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTPGIDGPNMGIWSDPGMGGWGGEEHGG
GRAGESSYGEEAASDHQYGEVSHDRAGRPNAVKEKDRGSERDWSGSSDRRYRDDRDPGYD
REMPREKDMDHDHDWSERRSRDDRDIGRERDRERDRNQERSRDRERSRDRDRDRDRDRDR
DRERDRDREHDRDRCREDKERQADHHRSRDQEVEHEDEWERGRSSRTHSKSRLSQEERRS
RSRDADYGKRRRLTSE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaggttcgggagggttcggggagggcgcggatcagatggatcagttccatcgt
aacgaggcgatctcggcggttgccgacgagggtttccttggcgaagaggatgaagattac
gaggatttgtacaacgacgtgaatgtcggggaagggtttttacaatctctgagaaagggc
gaagaattagggttaagaaatgaggaggaggagaataagaagaaagagtcgttgccgagg
gcagcaccggatcagcacgctgtatccataccgggcgttggtgagggtagtggtaatggt
ggtggtggggatgttggtgaggttaggctttctgggtttcagagtgatcaagggtttaga
gggaatgtggtcaagggtacggttggatcggggagtggtgggattagggttgagttaggg
caagggggaataacgagtaagatgaatgaggttgaggaacaaagtgggaataatattact
tcaggggttcaaggtatcgttggggggcagcaatcacatggtggcggtgcagttaatgta
gggagtgtggggaatggggctttggtgaggcacactggtgtagggagtgtggggaatggg
gctttggtgaggcacactggtggaggaggaaatgtgaatgggattggtggtgatggggtt
gcaaatagtggtggtagtggtgttggtgtaggaggaggaggtggagctggtggtattggc
ggtgttggaggtgggggaacgacactgtttgtgggtgatttgcattggtggactacagat
gcggaattggaatcggagttgtgcaagtatggacgggtaaaggaggtgaagttttttgaa
gagaaagcgagtgggaaatcaaaagggtattgccaggttgagttttatgacccagctgca
gcgaccacatgtaaggaggggatgaatgggcacatgtttaatggtaggccatgtgttgtt
gcatttgcatcgccatttagtgttaagagaatgggggaggctcaagtgaatcgaaaccaa
cagatgacacaagctgctcaagcaagaagggggcctaatgatgttccaggaaagcccagt
gggagcaacaatggatcaagcgggaattatcaaggtggggataataataacaatagaggt
tatgggagagggaattggggaagaggtaatgcacaggggggaatggggaatagagggcca
gctgggcccatgaggaataggggtggtgggatgggtgggatgggtgggagaggtataatg
ggaaatggcggtaatgggtttggtcagggtattggtgcaaccccacctttgttgcatcct
cagtctatgatgggtcaggcttttgatccagcatttggtgggcatatggggagaatgggt
ggctatggaggctttccaggtgctccaacgcctccattctccgggattttgtcttcgttc
ccccatgtgggaggtgttggtttgcctggagtagcccctcacgtgaatccggcattcttt
ggaagagggatgcccatgaatggaatggggatgatgccaacaccaggcattgatgggcct
aacatgggaatatggtcagatcctggtatgggtggatggggtggcgaggagcatggtggt
gggagagctggagagtctagttatggggaggaagctgcatctgaccatcaatatggtgag
gttagtcatgatagagcaggtaggccaaatgctgtgaaggaaaaggatagaggttcagaa
agggactggtctggatcttctgatagaaggtatcgagatgatagagatccaggttatgat
agggaaatgcctagagaaaaagatatggaccatgaccatgactggtcagaaagaaggagc
cgtgatgatagagatattggtcgagaacgggatagagagcgtgaccggaatcaagagcgc
tcccgggatcgagagcgctcccgggatcgggatcgggatcgtgaccgtgaccgtgaccgt
gaccgtgagagggatcgtgatagagagcatgaccgtgacaggtgcagagaagacaaagag
aggcaggcagatcatcataggtccagggaccaagaagtggagcacgaggatgaatgggaa
agaggtcggtcttcaaggactcacagcaagtcacggttatcacaagaggaaagacgttca
agatcaagggatgctgattatgggaagagacggaggcttacctccgaataa
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