Juglans regia (English walnut): 108989700 Help Entry 108989700         CDS       T05245                                  Name (RefSeq) DNA ligase 1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism jre  Juglans regia (English walnut) Pathway jre03030   DNA replication jre03410   Base excision repair jre03420   Nucleotide excision repair jre03430   Mismatch repair Brite KEGG Orthology (KO) [BR:jre00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     108989700    03410 Base excision repair     108989700    03420 Nucleotide excision repair     108989700    03430 Mismatch repair     108989700  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:jre03032]     108989700    03400 DNA repair and recombination proteins [BR:jre03400]     108989700 Enzymes [BR:jre01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      108989700     6.5.1.6  DNA ligase (ATP or NAD+)      108989700     6.5.1.7  DNA ligase (ATP, ADP or GTP)      108989700 DNA replication proteins [BR:jre03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     108989700  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      108989700 DNA repair and recombination proteins [BR:jre03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      108989700    NER (nucleotide excision repair)     Other NER factors      108989700    MMR (mismatch excision repair)     Other MMR factors      108989700 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  108989700 NCBI-ProteinID:  XP_018818956 UniProt:  A0A2I4EHT2 LinkDB All DBs Position 14:17008542..17047559 Genome browser AA seq 784 aa AA seqDB search MLSLRSCYCLRHPPSLSHPLKALSFSPFPTIPFSPSLKPFASTNPKPFTMSSRPSAFDAL MSGARAAAKKKPLPRSSSPNKRKSLDSDSPSNTSIPNSLAPDISISQELKSLDESIGSDA APAAKKNKIRAVTVEQTISQFKTKMPQLKKKAGDFDPCSVAWWGEGERVPFIFLSLVLDM ISNETGRIVITDIVCNMLRTVIHTTPDDLVAVVYLSANRIAPAHEGLELGIGDASIIKAL AEACGRTEVQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTVIKVFNTFRLIAKESGKD SQEKKKNHIKGLLVAATDCEPQYLIRLLQMKLRIGLAEQTLLAALGQAAVYTEKHSTPPP NIQSPVEEAAKIVKQVYSILPVYDKIVPALLSGGVWNLPKACNFTPGVPLGPMLAKPTKG VSEIVNKFQDMEFTCEYKYDGERAQIHYMDNGSVEIYSRNAERNTGKFPDVVIAISRLKK PSIQSFVLDCELVAYDREKQKILPFQVLITRARKNVAVSDIKVDVCIFAFDMLYLNGQPL LQEELKVRREHLYNSFAEERGFLQFATAIISNDLEEIQKFLDTAVDSSCEGLIIKTLTRD ATYEPAKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEF QSICKIGTGFTEAILEERSASLRSKVIPKPKPYFRYADSMNPDVWFEPTEVWEVKAADLT ISPVHRAAIGIVDPDKGISLRFPRLVRIREDKTPEQSSSSELVADMYNAQKHNHPNNQDD NEDE NT seq 2355 nt NT seq  +upstreamnt  +downstreamnt atgctctcgctccgttcatgctactgcctgcggcatcctccctcactttctcaccccctc aaggccctctctttctctcccttccccaccatacctttctctccttctctgaagcccttt gcttccacaaaccctaaacccttcaccatgtcatctcgcccttccgcttttgacgccctc atgtccggcgctcgggctgccgccaagaaaaagcccctaccccgctcctcttctcccaac aaacgcaaatccctagattcagactctccctcaaacaccagcatccccaattctttagcg cccgatatctcaatttcccaggaattgaagagcttggatgagagcattgggtccgacgcc gcccccgcagctaagaagaataagatccgtgcggtgaccgtggagcagactatttctcaa tttaagaccaaaatgccacagttgaagaagaaggcgggggacttcgatccatgctcagtt gcatggtggggtgagggtgagagggttccattcatttttctcagtttggtcttggacatg atttccaacgagactgggcgtattgtgattacggatatagtgtgtaatatgttgaggact gtgatacatacaaccccggatgatctggtggcggttgtttatctttctgcgaacaggatt gcgccggcgcacgaaggtttggagctaggaattggggatgcttccataattaaggcactc gcggaggcttgtgggaggacagaggtgcaggttaaaaagcaatacaaggaattgggtgac ttgggtcttgtggcaaaagcaagccgttcatctcaatctatgatgcgcaagcctgatgcc ttgactgtcatcaaggtttttaatacattccggctgattgctaaggaatctgggaaagat agccaagaaaagaaaaaaaaccacatcaagggactacttgttgctgccactgactgtgaa cctcagtatctaattcgtctacttcagatgaagttgcgcattggattggcagagcagacc ctattagctgcattgggtcaagctgctgtctatactgaaaaacattctacaccacctcca aacattcagtctccagtagaagaggctgcgaagattgttaaacaagtatactctatactc cctgtctatgacaagatagttcctgctcttcttagtggtggtgtatggaatcttccaaag gcatgtaactttacacctggtgtcccacttggacctatgctagcaaagccaaccaagggg gtatctgagattgtaaataagtttcaggatatggaatttacctgtgaatacaaatacgat ggagaacgtgcccagatccattatatggacaatggttcagtggagatatatagtcgaaat gcagagcgaaacactggaaagtttcctgacgttgtcattgcaatttcaaggttaaagaag ccatctattcaatcatttgttctggattgtgaacttgttgcctacgaccgtgaaaaacag aaaattctgcctttccaggtcctcatcactcgagctcgtaaaaatgtggctgtgagtgat atcaaggttgatgtttgcatatttgcttttgatatgttgtatcttaatggccaaccgctt cttcaggaagagcttaaagttcgtagggagcacctttacaactctttcgcggaagagcgt ggatttttgcagtttgcaaccgcaataatatcaaatgatcttgaggaaatacagaaattt cttgacactgctgttgattcaagttgtgagggcttaattattaaaacattgactagagat gctacatatgagccagccaagcggtcactcaattggttaaaattgaagaaagattacatg gatagtattggggactcgctagatttggtacctattgcagctttccatggccgtgggaag cgtacaggtgtctatggcgcttttctccttgcttgttatgacagtaataatgaagaattt caaagcatttgtaaaataggcacgggatttactgaagcaatccttgaagagcgttctgcc agtctacgttctaaagtgattcctaaaccaaagccgtacttccggtatgcagattcaatg aatccagatgtatggtttgaacccactgaggtttgggaggtcaaagctgcagacttgact attagccctgttcatcgtgctgcaattggcattgtggatcctgataagggcatttctctt cgattcccacgcctggttcggattcgggaagacaagactcctgagcagtcctcttcatct gagctggttgctgacatgtataatgctcaaaagcacaaccacccgaacaatcaagatgat aatgaagatgagtaa

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