Juglans regia (English walnut): 109001168
Help
Entry
109001168 CDS
T05245
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109001168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109001168
03009 Ribosome biogenesis [BR:
jre03009
]
109001168
Enzymes [BR:
jre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109001168
Spliceosome [BR:
jre03041
]
Complex A
U1 snRNP components
U1 related factors
109001168
Complex B
109001168
Ribosome biogenesis [BR:
jre03009
]
Eukaryotic type
Pre-60S particles
Helicases
109001168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
NUDIX_4
Motif
Other DBs
NCBI-GeneID:
109001168
NCBI-ProteinID:
XP_018833880
UniProt:
A0A2I4FQE3
LinkDB
All DBs
Position
7:complement(17466549..17473764)
Genome browser
AA seq
1168 aa
AA seq
DB search
MATAESAQASLGPRYAPDDPTLPKPWKGLIDGSTGVLYYWNPETNVTQYEKPSSLPPPLP
AGQPPVASTPKLASIPVAQSMPPNGVVAQVGQQITQAPQQQGQQVQVSQLSQQHRQMVAQ
QQSSMAAQVSPQQGSQIAQGGPQQSSQLGQPMHQQGQPALTQPQQLMQHMMIYPGQQIQQ
AQSQHMPQQPAQQLPQVVQQLPQQLGQQPQHQGSYMTQPQTHQFTHQQLQYMAYQQSMLP
QGHHNSQQHAQHSAQGQPFANQQDYQAAFPNREEVDFQNGNQIGFSPSQVQQPGTSSVQN
LPSGSNSVQMPQISVHPGQAQQYGGTLGNMQQPPMGQLQQTRIDLAHQQHGPRFQNQMGP
PMLHGQKSNLPAVGSKIHEDNLHGRTANEYYYNANKEGPAGSKDPKLAGIPMARNPQDKW
ISGVPSHNVMPGHTSGPNAITGHSIHNSFAHSTGGPPFSNNALMRPPFLGTTDVSSLTPV
EAYCQQHEVTATGDNIPAPFMTFEATGFPPELLREIYSAGFTSPTPIQAQTWPIALQSRD
IVAIAKTGSGKTLGYLVPAFILLRHCRNNPQNGPTVLVMAPTRELATQIQDEVMKFGRSS
GVSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKKVDFRQVSLLVLDEADRML
DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGSVDELAANKAI
TQYVEVVPQMEKQRRLEQILRAQERGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKS
QGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG
ATGVSYTFFSEQDWKYAADLIKVLEGANQHVPPEVRELALRGAPSFGKDRGGMNHFDSGS
SGAGYGRYDSVGRGGMRDGGFGGRGGMRDGNLGGRGGMRGVGFGGRGGVRDGSFGGHGGR
SDFFPGRGNRGRGFGGPGGTHVGRGRNERGPYDRYNNMDGRGRGRGRGRFDNRRDIADRS
RGRSYSRSPERVRTWGNNRSRSNSRSRSRSRSRSRSWSRGRSHSRSWSRGRNRSYSRSPS
RSHSRSRSRSRSYDRYERSHEKTPDKQDLTIPEFEAAPESGMSPMSPGTQGNVSPGANLI
AQPPVVAITDALHPEDGLDSCHQSGAEP
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcggagtctgcccaagcttcccttggtccacggtatgcacctgatgatccc
acccttccgaaaccttggaagggtttgattgatggaagcacgggtgtgttatattactgg
aatcctgaaaccaatgtcacccaatatgaaaagccatcctctttgcctccaccattgcca
gctggccagcctcctgttgcttctacgcctaagttagcctcaataccggtagcccaatca
atgccaccaaatggtgtggtggctcaggttgggcagcagataactcaagccccacaacag
caggggcaacaagtacaagtgagccagttatctcaacagcacagacaaatggtggcacaa
cagcagagttcaatggcagcacaggtttctccccagcagggatctcaaatcgcacaaggt
ggaccacaacaaagttcgcaactgggacaacccatgcatcagcaagggcagccagcactg
acacagccgcagcaattaatgcaacacatgatgatctacccgggtcaacaaatccaacag
gcacagagtcagcacatgcctcagcagccagcccagcagttaccacaagttgttcaacaa
cttccccagcaacttgggcaacaaccacagcatcaaggctcttacatgacccaaccacaa
acacatcaatttacacaccagcaactgcaatacatggcatatcagcaaagcatgcttccc
caaggacatcacaattcacagcagcatgcccagcatagcgcacaagggcagccatttgca
aatcaacaggattatcaggctgcattcccaaatagggaggaagttgatttccagaatgga
aaccaaattggattttctccatcccaggtccagcaacctggtacctcatctgttcagaac
cttccttctggaagcaactcggttcagatgccacagatttctgttcatccaggtcaagcc
caacagtatggtggtactttggggaacatgcagcagcctcctatgggtcaattgcagcaa
acgaggattgatttggctcaccagcaacatggtcctaggtttcagaatcagatgggccca
ccaatgctgcatggtcagaagtctaatttgcctgcggttggatcaaagatacatgaggat
aatttgcatggtagaactgcaaatgaatattactataatgctaacaaggaagggcctgct
ggttccaaggatcccaagcttgcagggatacctatggcaagaaatccgcaggataagtgg
atcagtggtgtcccatctcataatgtgatgcctggtcataccagtgggccgaatgccatc
acagggcattccattcataactcattcgctcattcaactggtggtccgccattctcaaat
aatgctttgatgaggcctccttttttaggaactacagatgtttctagtctcacacctgtt
gaagcttactgccaacagcacgaagtcacagcaacgggggacaatattccagcaccattc
atgacatttgaagccactggtttccctccagagttattgagagagatatattctgctggt
ttcacatctcccacgccgattcaggcacagacatggccaattgcgctgcaaagtagggac
atagtggcaattgcgaaaacaggttctggaaaaacattggggtatttggtccctgcattc
attctccttagacattgccgtaataatcctcagaatggcccaacagttttagttatggct
ccaacccgtgaacttgctacacaaattcaagatgaagtcatgaaattcggccgttcatct
ggagtctcttgcacatgcctatatggtggtgctccaaagggcccacagctaaaagaatta
gatcgaggagcagatattgttgtggcaactcctggtcgtctcaatgacatcctcgagatg
aagaaggttgactttagacaagtttcccttcttgtgcttgatgaggctgatcgaatgctt
gacatgggttttgaacctcaaattcgtaagattgtgaatgagatacccccacgcagacaa
acgcttatgtacacagcaacttggcctaaagaagtaagaaagatagcaggcgatcttctt
gttaatcctgttcaggttaacattggcagtgttgatgagcttgctgcgaacaaggccatc
actcagtatgttgaggtagtcccacaaatggagaagcagaggcgcttggagcagatcctt
agagcccaagaacggggttcgaaggttattattttctgctccacgaagaggttgtgtgat
cagcttgcacgtagtattgggcgtaactttggggctgctgcaattcatggggacaagtct
cagggtgagagagactgggttttaaatcagttccgtagtggaaagtcccctatattggtt
gccaccgatgttgctgcccgtgggcttgacatcaaagatataagggtggtgatcaactat
gatttccctactggggttgaggactatgtccaccgcattggaaggactgggagggctggt
gccactggagtgtcatacaccttcttctctgagcaggactggaaatacgctgctgatttg
atcaaagttctggagggagctaaccagcatgtgcctccagaggtgagagagttggcttta
cgtggtgcaccgagctttggcaaggatcggggtggcatgaaccattttgattctggtagt
agtggggctggttatggtcgttatgattctgttggccgtggtggcatgagggatggtggc
tttggtggccgcggtggcatgagggatggcaacttgggtggacgtggaggcatgaggggt
gttggtttcggtggacgtggaggtgtaagagatggtagttttggtgggcatggtggtaga
agtgatttctttcctggtcgtggcaacaggggacggggatttggtggtcctggtggtacg
catgttggtcggggcaggaatgagcgtggcccatatgatcggtacaacaatatggatggg
cgtggacgtggccggggacggggaagatttgacaacagaagagacattgccgataggagt
agaggcagaagttatagccgtagccctgaaagagttcgaacatggggtaataatcgaagt
cgcagcaacagccgtagccgtagccgaagccgaagcaggagtaggagctggagcaggggt
cgtagtcatagccgaagctggtctcgtggccgtaatcgtagctacagccgcagccctagc
cgcagccacagccgcagccgcagccgcagccgcagctatgatagatatgagaggtcacat
gaaaaaactccagataaacaagatcttacaatacctgaatttgaggctgctcctgaatca
gggatgtctcctatgtccccaggtacacaaggtaatgtctctcctggggccaatctcatt
gcacagccacctgttgttgcaattactgacgcacttcatccagaggatgggttagactct
tgccatcaatcaggagcagaaccttaa
DBGET
integrated database retrieval system
