Juglans regia (English walnut): 109006106
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Entry
109006106 CDS
T05245
Name
(RefSeq) pre-mRNA-processing protein 40C isoform X1
KO
K12824
transcription elongation regulator 1
Organism
jre
Juglans regia (English walnut)
Pathway
jre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109006106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jre03041
]
109006106
Spliceosome [BR:
jre03041
]
Complex A
U1 snRNP components
U1 related factors
109006106
Complex B
109006106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
109006106
NCBI-ProteinID:
XP_018840821
UniProt:
A0A2I4GAA1
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Position
13:complement(21332011..21387889)
Genome browser
AA seq
1013 aa
AA seq
DB search
MASPAWLTQEIQPSASQAPVPGTSAVVSSGGPSTPTAAAPAPGAVTPTSKGLLGTASGST
QGPNQARFSNAPGYAVAPPLFSYNVLSNASTPPGSSQQSSSNSVINSNPPASPLLVQLPV
SGVSSSSSPSFSYNISQSSVAFPSNQQFQSSGNSLTAVAQEAGTLSSASTIPQPVSLPAD
NSTSSTIPVSSISSLNQVTSWVPSAPSFFMPPGMPGTPGTPGPPGIAAPAQISSNLTVLS
VATDSSSSAVPRPTMPTAPVLSSSAVQTANYPYASFPAMAAPPQGMWLQPSQMGGLPRSP
FQPYPAAFPGPFPLPARGMALPSVPLPDSQPPGVTPLGTAPTISVSSAASGHMLAGTLRM
QPELPPPGIDNRKNVEEVGTQDGAAVKEQLDAWTAHKTEAGVVYYYNAVTGESTYDKPLG
FKGEHDKVHVQPTPVSTTSILGTDWVLVTTSDGKKYYYNSKTKISSWQIPSEVTELKKKQ
DGEHSISLPHANLSTEKGSAPISLNAPAISTGGRDAMALKALAVPGSSSALDMIKKKLQD
SGSPITSSPNPAPSGIAASELNGSRAVDTTVKGLQSEDSRDKLKDANGDGNMSDSSSDSE
DADSGPTKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYV
KTRAEEERKEKRAAQKAAIEGFKQLLGEASEDIDHNTDYQTFRKKWGADPRFEVLDRKDR
EHLLNERVFPLKKAAEEKVQALRAAAATSFKSMLREKRDITANSRWSKVKDSLRNDSRYK
SAKHEDREIFFNEYISELKAGEEQSEREAKAKREEQEKLKERERELRKRKEREEQEMERV
RLKVRRKEAVASFQALLVEIIKDPQASWTESKPKLEKDPQGRATNTDLDPSDIEKLFREH
IKMLNERCVQEFRYLLAEVLTAEAAAQETEEGKTVLNSWSTAKRLLKPDPRYNKMPRKER
EVLWRRYADEILRRQKVALDQKEEKKHVESKGRNSADSGRFLSGSRRRTHDRR
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggcatcacccgcttggttaacacaggaaatacagccatcagcttctcaagcacctgta
cctggtacatctgctgtagtgtcatctggtggcccttcaactccaactgctgctgctcct
gctcctggtgcagttacacctacttcaaagggtttacttggtactgcaagtggttcaaca
caaggacctaaccaagcgagattttctaatgcacctggctatgcagttgctccacctttg
ttctcttataatgtgctttcaaatgctagtacacctcctggaagttctcagcagtcatca
tctaactctgtcattaactcaaatccacctgcatctccattgttggttcaactgccggtt
tcgggcgtgtcttcatcttctagtccgtctttttcatataacatttcacaaagcagtgtt
gctttccctagcaatcagcagttccaatctagtgggaattcattgactgctgttgcacaa
gaagctggcactctgtcatctgcatcaactatccctcagcctgtttcattacctgctgat
aattctacaagttctaccattcctgtatcttcaatatctagcttgaaccaagtaacttct
tgggtgccctctgccccatctttttttatgcctcctggaatgcctggaactcctggtaca
cctggtcctcctggaatagcagcgcctgctcaaatttcttctaatctgactgttctatct
gttgctactgattcttcctcttcagctgtcccaagacccactatgcctacagcccctgtt
ttatcaagttctgctgtccagactgcaaattatccctatgcatcctttcctgccatggct
gctccccctcagggaatgtggttgcagccttcacagatgggtggcctgcccaggtcaccg
ttccagccataccctgctgcttttcctggtccctttcctttgccagcacgtggtatggct
ctcccttctgttccattacctgattctcaacctcctggcgttactcctttgggaactgca
ccgacaatatctgtgtcttctgctgcttctggtcatatgctggcaggaactttgaggatg
cagccagaattacctcctccgggtattgataataggaaaaatgtagaagaagttggaacc
caagatggagctgctgttaaggaacaattagatgcctggactgctcataagacggaggca
ggagtagtctactattataatgccgtgactggagaatccacttatgataaacctcttggc
tttaagggggagcatgataaagtacatgtgcagccaactccagtttcaacgactagcata
ttgggtactgattgggtattagtcaccacaagtgatggtaaaaaatattactacaacagc
aaaacaaagattagtagctggcagatcccaagcgaggtgacagaattgaaaaagaagcag
gatggagaacattcaatatctctgccacatgctaatttatcaactgaaaaaggatctgct
ccaattagtttgaatgctcctgccattagcacaggtggccgtgatgctatggctctgaaa
gccttggctgtcccaggatcatcatctgcgctggatatgataaaaaagaagttgcaggac
tctggatctcctattacctcctcacctaaccctgcaccatcaggaatagcagcatcagag
ttaaatggctctagagcagttgataccacagttaaaggtctgcaaagtgaggacagcaga
gataagctaaaagatgctaatggggatggtaacatgtccgactcttcctcagattcagag
gatgcagacagtggaccgacaaaggaggaatgtattatccagtttaaggaaatgcttaag
gaaagaggagtggcaccattctcgaaatgggagaaggaattgccaaagatagtgtttgat
ccacgcttcaaggcaattccaagttattctgctaggaggtcattgtttgaacactatgtt
aaaacacgtgctgaggaggaacggaaggaaaaacgtgcagctcaaaaggctgcaatagaa
gggtttaagcagttactgggtgaagcatcagaggatattgatcacaacactgattatcaa
actttcagaaagaaatggggtgctgatccacggtttgaggttttggaccgcaaggatcgg
gaacatttattgaatgaaagggtctttcctttaaagaaagctgctgaagaaaaggtccaa
gcactacgtgcagctgctgccaccagttttaagtccatgcttagagagaaaagagatata
actgccaattcccgttggtcaaaggtgaaagatagtctgaggaatgactcaagatacaaa
tctgctaagcacgaggacagagagattttttttaatgagtatatatctgaactgaaggct
ggagaagagcaatcagaacgagaagcaaaagccaaaagggaggagcaggagaagttgaaa
gaaagggagcgagaattgcggaaaagaaaggaaagagaagaacaggaaatggagagggtg
cggttgaaagttcgcagaaaggaggcagttgcatctttccaggctttacttgtggaaata
attaaagacccccaggcatcttggacagaatctaagccaaagttggagaaggatccccaa
ggacgtgctaccaatactgacttggatccatctgacatagaaaagctctttcgggaacac
ataaagatgctgaatgagcgatgtgtgcaggaattcaggtatttgttagctgaagtcttg
acagcggaagcagctgctcaagagacagaagaagggaaaacagttctcaattcatggtcg
actgctaaacgtcttctaaagcctgatcccaggtacaacaagatgccaagaaaagagagg
gaagtcttgtggcgccgatatgccgatgagatactaaggaggcaaaaggtggcacttgat
cagaaagaagagaagaagcatgtagagtcaaaaggtagaaactcagctgattctgggagg
tttctgtctgggtcaagaagaaggacccacgatcgaagatag
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