Janthinobacterium rivuli: P9875_25445
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Entry
P9875_25445 CDS
T09016
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
jri
Janthinobacterium rivuli
Pathway
jri02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
jri00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
P9875_25445 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jri03021
]
P9875_25445 (rpoD)
Transcription machinery [BR:
jri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
P9875_25445 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4238
GerE
Motif
Other DBs
NCBI-ProteinID:
WFR78999
LinkDB
All DBs
Position
complement(5609445..5611685)
Genome browser
AA seq
746 aa
AA seq
DB search
MPIKKPESKAAVKPTKVTTKAEKALDRPEARVTSAPVVSQTTDAATLAAIDTSGYVLPSV
KVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKERALLKDAFSSDTEA
SEEELERRRQKLKTLIKFGKERGFLTYAEINDHLPENIVDPEAIEGIIGTFNDMGIAVYE
HAPDAETLLLSDNVAVVTSDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTR
EGEIEIAKRIEDGLKDMIQAISACPVTIAEIIAAADRIANEEIKIDEIVDGLVDENEPVA
AAPVVAAPVEEDEEEGEAEEEEEEEEEEASASGAAGFSAEQLETLKRTALEKFAIISQQF
DKMRRAFEKEGYNSKPYAKAQEAISQELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQIL
DVAVNRCGMPRAHFIKVFPGNETNLDWVDGEVNAGHAYSAILGRNIPTVKELQQRLIDLQ
ARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR
QILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT
LAPADAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR
QIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
gtgccaatcaagaaacccgaatccaaagcggctgtaaagcccactaaagttaccacgaaa
gccgaaaaggcgctcgaccggccagaagcgcgcgtcaccagcgcgcccgtggtcagccag
accaccgacgccgccaccctggccgcgatcgatacgtccggttatgtcttgccgtcggta
aaagtgccaggccgccgcggccgcaagccaaaagaattccagccagaaaatgatgaagtc
gccgccctgaacgccgtcgagcgggccgaactgaaggccgtcgacaaggccaaggccaag
gaccgcaaggcgaaagagcgcgcgctgctgaaggatgcgttctcgtccgacacggaagcg
agcgaggaagaactcgagcgccggcgccagaaactcaagaccctgatcaagttcggcaag
gaacgcggtttcctgacctacgcggaaatcaacgatcacttgcccgaaaacatcgtcgat
ccggaagccatcgaaggcatcatcggtaccttcaatgacatgggcatcgccgtctacgag
cacgcgcccgatgcggaaacgttgttgttgtccgataacgttgccgtcgtcaccagcgac
gacgaggcggaagcggcggccgaggcggcattgtcgaccgtcgactccgactttggccgc
accaccgaccccgtgcgcatgtacatgcgcgagatgggctcggtcgagctgctgacgcgc
gaaggcgagatcgagattgccaagcgcatcgaagatggcttgaaagacatgatccaggcc
atttccgcctgtcccgtgacgatcgccgagatcatcgccgccgccgaccgcatcgccaac
gaagagatcaagatcgacgaaatcgtcgacggcctcgtcgatgaaaacgaaccggtcgcc
gccgcccctgtcgtggccgcgcccgtcgaagaagacgaggaagaaggcgaagcggaagaa
gaggaagaagaagaggaagaagaagcgagcgcttcgggcgccgccggcttctccgctgag
cagcttgaaaccctgaaacgcacggcgctggaaaaattcgccatcatttcgcagcaattc
gacaagatgcgccgcgccttcgaaaaagaaggctacaactcgaaaccctacgccaaggcg
caggaagccatttcgcaagagttgctgggtatccgtttcacggccaaggtcgtggaaaag
ctgtgcgacaccctgcgtggccaggtcgacgaagtgcgccatatcgagaagcagatcctc
gacgtggcagtgaaccgctgcggcatgccgcgcgcccacttcatcaaggtcttcccgggc
aatgaaaccaacctcgactgggtcgatggcgaagtcaacgcaggacacgcgtacagcgcc
atcctgggccgcaacattccgaccgtcaaggaactgcagcagcgcctgatcgacctgcag
gcgcgtgttgtattgccgctgccggacttgcgcaacatcaaccgccagatggcggccggt
gaaatgaaggcgcgcaaggccaagcgtgaaatgacggaggccaacttgcgcctggtcatt
tcgatcgccaagaaatacacgaaccgcggcctgcaattcctcgatttgatccaggaaggc
aatattggcctgatgaaggccgtcgacaagttcgagtaccgccgcggctacaagttctcg
acgtatgcgacctggtggatccgccaggccatcacgcgctcgatcgccgaccaggcgcgc
acgatccgtattcccgtgcacatgatcgagacgatcaacaagatgaaccggatctcgcgc
cagatcctgcaggaaacaggtgcggaacccgatccggccaccctggcgatcaagatggaa
atgcccgaggacaagatccgcaagatcatgaaaatcgccaaggaaccgatctcgatggaa
acgccgatcggcgacgacgacgattcgcacttgggcgacttcatcgaggacaacaacacg
ctggcgccggccgacgcggccctgcacgcgtccatgcgcggcgttgtcaaggacgtgctc
gattccctgacgccacgcgaagcgaaagtgctgcgcatgcgtttcggcatcgagatgtcc
accgaccacacgctggaagaagtgggcaagcaatttgacgtgacgcgcgagcgcatccgc
cagatcgaagccaaggcgctgcgcaagctgcgccacccatcgcgctccgacaagctgaaa
agcttcttggaaggcaactag
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