Kutzneria buriramensis: Q4V64_45515
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Entry
Q4V64_45515 CDS
T09250
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kbu
Kutzneria buriramensis
Pathway
kbu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q4V64_45515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kbu03400
]
Q4V64_45515
Enzymes [BR:
kbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q4V64_45515
DNA repair and recombination proteins [BR:
kbu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q4V64_45515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DUF6426
Collagen
Motif
Other DBs
NCBI-ProteinID:
WKX14387
LinkDB
All DBs
Position
10431469..10432467
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AA seq
332 aa
AA seq
DB search
MSGDGVRTVRAGKRTVEVHRPDKVLFPGDGDGGVKEYTKGDLVDYYRSVAPFMLPHLRGR
PLMLERHPDGLDGQTFMQKNTPEHYPDWITRVEVAKEDGTVRHTVCDDTATLVYLADQAA
LTLHRWLSRVGRVDHPDRMVFDLDPSGDSGASGVSGDSGDSGDSGDSGGAFAAVREAARL
LGDLLDELKLPSALMTTGSRGLHVIVPLNGHHDFDEVRRFARDVADTLAAGHPDRLTTAA
RKKDRGDRLYLDVQRNAYAQTAVAPFTVRAKPGAPVATPLAWTQLDDLGLDARRWTIADA
VEQARTNPWAGVLTRGRALGLARRRLNALMPQ
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggtgacggcgtacggaccgtccgggcgggcaagcgcacggtggaggtgcaccgc
ccggacaaggtgctcttccccggcgacggggacggcggcgtgaaggagtacaccaagggc
gacctcgtcgactactaccggtccgtcgccccgttcatgctgccgcacctgcgcggccgt
ccgctgatgctggagcggcacccggacggcctcgacggccagacgttcatgcagaagaac
accccggagcactacccggactggatcacccgcgtcgaggtggccaaggaggacggcacc
gtccgccacaccgtgtgcgacgacaccgccaccctcgtctacctcgccgaccaggccgcc
ctcaccctgcaccgctggctgtcccgcgtcggacgggtcgaccaccccgaccggatggtc
ttcgacctcgatccgtcgggggactccggggcctccggcgtctcaggggactcaggggac
tcaggggactccggggattccgggggcgctttcgcggcggtgcgggaggcggcccggctg
ctgggcgacctgctcgacgaactgaagctgccctcggccctgatgaccaccggctcgcgc
ggcctgcacgtcatcgtgccgctcaacggccaccacgacttcgacgaggtacgtcggttc
gcccgggacgtcgccgacaccctggccgccggccaccccgaccggctgaccaccgccgcc
cgcaagaaggaccgcggcgaccggctctacctcgacgtgcagcgcaacgcttacgcgcag
accgcggtcgcgcccttcaccgtccgcgccaagcccggcgcgcccgtggccaccccgctc
gcctggacccagctggacgacctgggcctcgacgcccgccgctggaccatcgccgacgcc
gtcgagcaggcccgcaccaacccctgggccggcgtgctgaccaggggccgcgccctcggc
ctcgcgcggcgccggctcaacgcgttgatgccccagtga
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