Candidatus Kinetoplastibacterium crithidii TCC036E: CDEE_0626
Help
Entry
CDEE_0626 CDS
T02464
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
kct
Candidatus Kinetoplastibacterium crithidii TCC036E
Pathway
kct03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
kct00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDEE_0626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
kct03019
]
CDEE_0626
03016 Transfer RNA biogenesis [BR:
kct03016
]
CDEE_0626
Enzymes [BR:
kct01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CDEE_0626
Messenger RNA biogenesis [BR:
kct03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CDEE_0626
Transfer RNA biogenesis [BR:
kct03016
]
Prokaryotic type
tRNA degradation factors
CDEE_0626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
AGF47647
UniProt:
M1LPR0
LinkDB
All DBs
Position
complement(396363..398546)
Genome browser
AA seq
727 aa
AA seq
DB search
MAKLEKNNIKLNETIPNWFDHNLPSREEIVSCIRKHNKKLNELDIANLLQIKQKKTITSL
KRRLAAMQKDEQIVIDNLGYISININNIVLTGKVTLKNDGTGVLSTNSEKIFINHKEMRK
VFHGDHVQVKKVKYNKTLNCTEGKILEVLERSSKNIIGKIIKRENNFYLIPIEPKYNNKI
ILPDKNLSEGQVVIIDIIKQPSVYSLAVGNIKEYIGNINDPKIGTKVSLEKFHIRNSFNE
KIFEELESITNDISSFKKNRTDLTSLPFITIDDENARDFDDALFCKKIIDKNGIISWEVF
VAIADVSEYVKPDMEINQEAFERGTSIYFPEYVVPMLPEKISNNICSLIPEEKRLVLVCQ
FTVSESILSDKDHIVKNYSFYQAIIKSKARMSYDSIDKFISDKNINIDDDVKVNIDNLQQ
AYNILSIASKLRGSIAFEMQENKIIFSENGHIEKVVKKERYIANKIVEECMLAANSCAAH
FIYINKNICLYRVHDKPSNSSVNNLTKFLTTQNIKIDNYNFSTSQGINNFLEDIRDRNNF
NIIQLACLQAMQPASYSIHNIGHFGLSYELYAHFTSPIRRYPDLFNHRMIKKIINSTNHN
PLHGTSNDELIKFGNDMSICERSADEASRYAHNWMLLSFLKKYEGKFFNGIITNILNYGM
FVNIENMFIDGMLHISELKKEKFKYDKDMNYFYNKESKISYNLGGKIRVLIKLVNIEQGQ
VVLGLVK
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaattagaaaaaaataatattaaattaaatgaaacaattccaaactggtttgat
cataatttaccttcgagagaagaaattgtttcttgcataagaaaacacaataaaaaatta
aatgaactagatatagcaaatttattacaaataaaacaaaagaaaactattactagcctg
aaaagacgtctagctgctatgcaaaaggatgagcagattgttattgataatttaggatat
atatcaataaatataaacaatattgttttaacaggtaaagttacacttaaaaatgacggc
actggtgttctatcaacaaacagtgagaaaatttttataaatcacaaggaaatgcgcaaa
gtctttcatggcgatcatgtacaagtaaaaaaagtaaaatataacaaaaccttaaattgt
acagaagggaaaattttagaagtgttagaacgctcatctaaaaatataataggtaaaatt
atcaaaagagaaaataatttttatttaatacctatagaaccaaaatacaataataaaatt
atattgcctgataaaaatttatcagagggtcaagtggttattattgatataataaaacaa
ccatcagtttattcattagccgtaggcaatataaaagagtatatcggtaatatcaatgat
cctaagataggaactaaagtttctttagaaaaatttcatatcagaaattctttcaatgaa
aaaatatttgaagaattagaaagcatcacaaatgatataagctcttttaaaaaaaataga
actgatttgacgagtttaccatttattacaatagatgatgaaaatgctcgtgattttgat
gatgcattattttgcaaaaaaataattgataaaaatggaataatttcatgggaagttttt
gtagctattgcagatgtatcagaatatgtaaaacctgatatggaaataaatcaggaggca
tttgagagagggacaagtatatattttccagaatatgttgttcctatgttgcctgaaaaa
atatcaaacaatatttgttctttaatacctgaagaaaaaagattagtgcttgtttgtcaa
tttacagtatctgaaagcatactatcagataaagatcatatagttaaaaattactcattt
tatcaagcaattatcaaatcaaaagcaagaatgagctatgacagtatagacaagtttata
tctgataaaaatattaatattgacgatgatgttaaggttaatattgataatcttcaacaa
gcatataatattctctcgatagcttcaaaattaagagggtctatagcatttgaaatgcaa
gaaaataaaataattttttcagaaaatggacacattgaaaaagtagtaaaaaaagaacga
tatattgcaaataaaatagttgaagaatgcatgttagccgcaaacagttgtgcagcacac
ttcatttatataaataaaaatatctgtctatatagagtacatgacaaaccttcgaatagc
tccgttaataacttaactaaatttctaacaactcaaaatattaaaatagataattataat
ttttctacatcacaaggcataaataattttctagaagacataagagataggaataacttt
aatattatacaactagcctgtttgcaggcaatgcagcctgcatcttatagcatacataat
ataggtcattttgggttatcgtatgaattatatgctcatttcacatctccaattagaagg
tatccggatttatttaatcataggatgataaagaaaataattaactcgacaaatcataat
ccattgcatggaacttctaatgatgaacttataaagtttggaaatgatatgtctatctgt
gagcggtctgcagatgaagcttctagatatgctcataattggatgttattaagtttttta
aaaaaatatgaaggtaaatttttcaatggaattataacaaatattctaaattatggtatg
tttgtaaatatagaaaatatgtttatagacggaatgctacatatatcagaattaaaaaaa
gaaaaatttaaatatgataaagatatgaactatttttataacaaagaatcaaaaatatca
tataatttaggtggaaaaatcagagtgcttattaagcttgtgaatatagaacaagggcaa
gttgtactggggttagttaaataa
DBGET
integrated database retrieval system
