Dokdonia sp. 4H-3-7-5: Krodi_0956
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Entry
Krodi_0956 CDS
T01484
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain acyl-CoA synthetase [EC:
6.2.1.3
]
Organism
kdi
Dokdonia sp. 4H-3-7-5
Pathway
kdi00061
Fatty acid biosynthesis
kdi00071
Fatty acid degradation
kdi01100
Metabolic pathways
kdi01212
Fatty acid metabolism
kdi02024
Quorum sensing
Module
kdi_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
kdi00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Krodi_0956
00071 Fatty acid degradation
Krodi_0956
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Krodi_0956
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
kdi01004
]
Krodi_0956
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
kdi04147
]
Krodi_0956
Enzymes [BR:
kdi01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Krodi_0956
Lipid biosynthesis proteins [BR:
kdi01004
]
Acyl-CoA synthetase
Long/very long chain acyl-CoA synthetase
Krodi_0956
Exosome [BR:
kdi04147
]
Exosomal proteins
Exosomal proteins of breast milk
Krodi_0956
Exosomal proteins of breast cancer cells
Krodi_0956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
Sp-DndD
BrnT_toxin
Motif
Other DBs
NCBI-ProteinID:
AEE18940
UniProt:
F4AVC3
LinkDB
All DBs
Position
complement(1094918..1096714)
Genome browser
AA seq
598 aa
AA seq
DB search
MDYKHLVVNVKENALCFENKNALYVKNETLNTWEGISWKNMYYRVENLAKGLLQFGVETQ
HNVAIFAENMPNWIIADLAIMSIRAVTVPIYATCSTKEVDYVINDAEVSLLFVGNQHEYD
QAYELLESSSYLKLIVALTDTIKLQPSVSSMYLEDFVATSPTQEIEDIYLKRQQDLDVKD
LASIIYTSGTTGEPKGVMIGHANIGASLAAHKYELDISDQDVSLSFLPLSHIFERSWVFF
CLHMGIEVYFNQDPKKIAEVLKEVRPTVMCTVPRIFEKIYAAIQAKTKEATPTKQKLASW
ALSVGDNYYNQHQRLEKKVPLGLNLKYKIADKIVLSKLRALFGGRIKFMPCGGAPLAADM
VSFFHSFGLDVKCGYGLTETTATVSLFGYTNFEFNSAGKSIEGTEIKIGDNDEILVKGPG
VMQGYYKKPEATAQVFKDGWFCTGDAGRLDEHGNLYITDRIKDLMKTSGGKYIAPQKLET
ALISDSLIEQLAVIGDQQKYVTALAVPNFENLKKYANEHNISFESMEELIKDNKVVALFE
KRFDELQQEFSAFEKIKKFTLLPREFSIEEGEITPTLKIKRKIVQKKYKALIDKMYAE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggattacaaacatctagtagtaaatgtcaaggaaaatgcgctatgctttgaaaacaag
aatgcgctttatgtaaagaatgagacacttaatacttgggaaggtataagctggaaaaat
atgtattaccgtgttgaaaatcttgccaaaggtttactgcagtttggtgttgaaacacag
cataacgtagccatttttgccgaaaatatgcctaactggattattgcagaccttgcgata
atgagcataagagcagtaacggtacctatctatgcaacatgctctacaaaggaagtagac
tatgtgataaatgatgctgaggtaagcttgctttttgtgggtaatcagcatgaatacgat
caggcttatgaacttctagaaagctcttcatacttaaagcttattgtagctcttacagat
accattaagttacaaccctctgtttcttctatgtatttagaagactttgttgctactagc
cctacccaagaaattgaagacatctatttaaaaagacagcaagaccttgatgtaaaagat
ctagcaagtattatctatacttcaggaaccactggagaacctaaaggtgtgatgataggc
catgctaatataggagcttctcttgcagcgcataaatatgaacttgatatatcagatcaa
gatgtgtcattaagctttttaccactcagtcatatttttgagcgtagttgggtgtttttc
tgtttgcacatggggattgaagtgtattttaatcaagatccaaagaaaattgcagaggtt
ctcaaagaagtgcgaccaacggtgatgtgtacagtgcctcgtatttttgaaaaaatttat
gcagctatacaagcgaaaacaaaggaggctacgcctacaaagcagaaacttgcaagctgg
gcactaagtgtaggtgataactactataatcagcaccaaaggcttgagaaaaaagtgcca
ctaggactaaatctaaaatataaaattgccgataagattgtattgagcaagttgcgtgca
ctctttggagggcgtattaaatttatgccttgtggtggagcgccacttgcggcagatatg
gtttcattttttcactcctttggtcttgatgtaaaatgtggctacggactcacagaaacg
accgcaacagtatctttatttggatacacaaattttgaattcaactctgctggaaaaagc
atagaaggtactgagattaaaataggagataatgatgaaatccttgtaaaaggccctgga
gtcatgcaaggctactataaaaagccagaagcaacagctcaggtttttaaggacggatgg
ttttgtacaggtgatgcaggaagactagatgagcatggaaatctatacatcacagataga
atcaaggatttaatgaaaacatctggaggtaaatatatagctcctcaaaaattagaaaca
gcgcttatcagtgattcgcttattgagcaacttgcagtaattggagatcagcaaaaatat
gtaacagcacttgcggttcctaattttgagaatttgaagaagtatgcaaatgagcacaat
atctcatttgagagtatggaagagctcattaaggacaataaggttgtagcactttttgaa
aaacgttttgacgagctacagcaagaattctcagcttttgagaagataaaaaagtttacg
ctgcttcctcgtgagttcagtatagaagaaggggaaataacgcctaccttaaaaattaaa
agaaaaatagttcagaaaaaatacaaagcacttattgataagatgtatgcagagtag
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