Komagataeibacter europaeus: S101446_00724
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Entry
S101446_00724 CDS
T04893
Symbol
ligD
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
keu
Komagataeibacter europaeus
Brite
KEGG Orthology (KO) [BR:
keu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
S101446_00724 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
keu03400
]
S101446_00724 (ligD)
Enzymes [BR:
keu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
S101446_00724 (ligD)
DNA repair and recombination proteins [BR:
keu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
S101446_00724 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARW15864
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All DBs
Position
825482..826381
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AA seq
299 aa
AA seq
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MPAVKTPTARAGHGVMLTHPDRVYWPDADITKAGLADYYKAVWPRMAPFIIDRPLALLRC
PEGIEGPRFFQKNAWKGMNAHIVALDDPQGTPRGHLIGIHDLDGLMGLVQGAALEIHPWQ
ASCHDWERPDQLVMDLDPGEGVGWADVIAAARAVRARLEASGLAAFVKTSGGKGLHVIAP
LEPVADWAGAKTFAHALAQDMAADSPDRFITTVSRARRHGRILLDYLRNQRGATSVAPYS
TRARPGAPISMPVSWAELDALTGPAQFTVGNAMERLASQRADPWADFHAARRPIGTRAP
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagtgaaaacacccacggcccgggccggccatggtgtcatgctgacccatccg
gaccgggtctactggccggatgccgacataaccaaggccggtctggccgattattacaaa
gctgtatggccacgcatggccccgttcatcatcgaccggccactggcgctgctgcgctgc
ccggaagggatcgaggggccacgtttcttccagaaaaatgcgtggaagggcatgaacgcc
catatcgtggcgcttgatgacccgcagggcacgccacggggccatctgatcggcatccat
gatcttgatggcctcatggggctggtgcagggggccgcactggaaatccatccctggcag
gcttcatgccatgactgggaacgacccgaccaactggtcatggaccttgatccgggggaa
ggggtcgggtgggcagacgtcattgctgccgcgcgggccgtgcgcgcgcggcttgaagcc
tccgggcttgcggcctttgtcaagacttctggcggcaaggggctgcatgtcatcgccccg
cttgaacccgtagccgactgggcgggcgcaaagaccttcgcccatgcactggcgcaggac
atggccgccgacagcccggaccgtttcattacgactgtttccagggcgaggcggcatggc
aggatcctgcttgattacctgcgcaaccagcgcggggcgacatccgtggcgccctattca
acccgcgcgcgtcccggcgccccgatctcgatgccggtaagctgggcggaactggacgca
ctgacgggcccggcgcagttcacggtgggcaacgccatggaacggcttgcatcgcaacgc
gcggacccgtgggcggattttcatgccgcgcgccgaccgattggaacacgcgccccctga
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