Kribbella flavida: Kfla_5357
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Entry
Kfla_5357 CDS
T01155
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kfl
Kribbella flavida
Pathway
kfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Kfla_5357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kfl03400
]
Kfla_5357
Enzymes [BR:
kfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Kfla_5357
DNA repair and recombination proteins [BR:
kfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Kfla_5357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADB34370
UniProt:
D2PLB5
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All DBs
Position
5776361..5777287
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AA seq
308 aa
AA seq
DB search
MAAGPTQLTTEVDGQTMKLTNLGKVLYPQTGFTKAEVIDYYHQIAPLLLPHLTDRPLTRK
RWPDGTGAAYFFEKNAPRGTPDWVRTVTLPTPGSSTGRDEADFVIADDVQTIVWLANLAA
LELHVPQWRIGLSDDGKDPQADLVVFDLDPGPGVTIVECCDVALALRELLGHYGLEGWPK
TSGNKGMHLYVPIEPASSRATSAFAKQLAEQLAEALPENVTANMTKALRPGKVFIDWSQN
ASAKTTLAPYSLRGAEEPRVSTPIDWDEVAAATDQAELTFLPHEVLARVEQYGDVLEDLY
DDPRPLPS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggacccacccaactgaccaccgaggtcgacgggcagacgatgaagctcacc
aacctcggcaaagtgctctacccgcagacaggtttcacgaaggcggaggtgatcgactac
taccaccagatcgccccgctgctgctgccgcacctgacggaccggccgctgacccgcaaa
cgctggccggacggcaccggcgcggcgtacttcttcgagaagaacgcaccgcgcggtacg
ccggactgggtgcgcaccgtgaccctgccgacgcccggcagctccaccggccgggacgag
gcggacttcgtgatcgccgacgacgtgcagacgatcgtgtggctggcgaacctggccgcg
ctggagctgcacgtcccgcagtggcggatcgggctgtccgacgacggcaaggacccgcag
gccgacctggtcgtgttcgacctcgacccggggcccggagtcaccatcgtcgagtgctgc
gacgtggcgctcgccctgcgggagctgctcggtcactacgggctggagggctggccgaag
acctccggcaacaagggcatgcacctgtacgtgccgatcgagccggcctcgtcgcgggcg
accagcgcgttcgccaagcaactcgcggagcagctggccgaggcgctgccggagaacgtg
accgcgaacatgacaaaggcgctgcgacccggcaaggtgttcatcgactggagccagaac
gccagtgccaagaccacgctcgcgccgtactcgctgcgcggcgccgaggaacccagggtg
tccaccccgatcgactgggacgaggtcgccgcggccaccgaccaggccgagctgaccttc
ctgccgcacgaggtgctggcccgcgtcgagcagtacggcgacgtactggaggacctgtac
gacgacccgcggccattgccgtcctga
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