Kryptolebias marmoratus (mangrove rivulus): 108240778
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Entry
108240778 CDS
T05608
Name
(RefSeq) collagen alpha-2(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
kmr
Kryptolebias marmoratus (mangrove rivulus)
Pathway
kmr04510
Focal adhesion
kmr04512
ECM-receptor interaction
kmr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
kmr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108240778
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108240778
09142 Cell motility
04820 Cytoskeleton in muscle cells
108240778
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
kmr04147
]
108240778
00536 Glycosaminoglycan binding proteins [BR:
kmr00536
]
108240778
Exosome [BR:
kmr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108240778
Glycosaminoglycan binding proteins [BR:
kmr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108240778
Hyaluronan
Extracellular matrix or blood plasma proteins
108240778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
108240778
NCBI-ProteinID:
XP_017280008
LinkDB
All DBs
Position
LG6:complement(9780273..9799431)
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AA seq
1048 aa
AA seq
DB search
MVGLHPIMTVLSGFICLWLLRAAVAQVGPRGPRPVPGRGDSPGPTPPPLPPEPTPIPEGC
EKLIDCPIKVYFTIDTSETIALQESPPGSLVESIKEFTKIFTEKLADEEYRGQIQITWSI
GGLHFSQTQKVFSHFTTRENFIRSLSRIRYLGKGTYIDCALRNMTQQVTQHYYSGPKAAL
FSVVITDGHVTGSPCMGIKMMADRARDQGIHIFSVAASRSIDELGMRDIASSPTEVYRDN
YIVMEVVGGKPRLSTESIDQIIKVMKYQAYLQCYKPTCLAVPGIPGRKGSSGPKGAKGDR
GKTGQKGEKGRQGDPGIEGPIGRPGLKGEIGFKGEKGERGLIGAKGVAGAPGRNGTDGQK
GKMGRIGVPGCKGDLGDKGPDGYPGEFGRPGPPGVEGEKGDPGLPGKPGPPGPEGERGPR
GENGNPGNPGPPGGKGIQGSKGRLGPNGDLGRRGGPGVKGAKGPNGQKGAKGERGPYGER
GQPGEEGFNGAKGDQGLPGPRGQPGEPGQPGGNGTAGHPGDPGPRGDPGSLGPKGDKGRT
GFGYPGPRGPSGSTGERGNKGPRGSRGECGAKGEPGDNGPEGEPGEPGPPGEPGERGPQG
DAGKDGGPGPIGDPGLTDCDVMTYIRETCGCCDCEKHCGALDIVFVIDSSESVGLMNFTL
EKNFVINTINRMGSMASDPASPTGTRVGVVQFSHEGTFEAIRLDDPTITSISAFKMAVKN
LQWIAGGTFTPSALRFAYDNLIKGSKRSRAKISVVVVTDGRFDPRDDDNQLRYLCNDPDV
TVNAIGVGDMFDKRHDSETLVSIACNNKSRITEMKQYTDLVAEDFIEKMETVLCPDPVIK
CPDLPCKTELDVAPCVGRPVDLVILLDGSERLGMENFNQVRNFVESVTHKLAMAKGKNDR
NWARLALIQFGKEEENQVAFPLTHDRDAIASGLASLTYLDSSSAVGPAIIYTINNLVGKG
STRKTRRGAEVSFVFVTDGVTNGTILDEAVSAMHREQIVSTVIATGSDVDQEVLTKLAMD
NQEAIFKVQKFSDVLQTRMFNRFIRWVC
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atggttggtctccatccaatcatgaccgtgttatcagggttcatctgtctttggctgctc
cgagctgcggtggctcaggtcgggcctcgcggacccagaccagtaccaggccggggggac
agtccaggaccaactccgcctccgctcccacctgagcccacaccgatacctgaaggttgt
gagaagctcatcgactgccccatcaaggtgtacttcaccattgacacctcagagaccatc
gccctgcaggagtccccgcctggcagtctggtggagagcatcaaggagttcaccaaaata
ttcaccgaaaaacttgccgacgaggagtacaggggccaaatccagatcacctggtccatc
ggaggtttgcacttctctcagacgcagaaggtcttcagccacttcacaaccagagagaac
ttcatcaggagcctcagccggatcaggtacctgggcaaaggcacctacatcgactgcgcc
ctcagaaacatgacccaacaggtgacccagcactactattcggggccgaaggccgccctc
ttctccgtggtcatcacggacggccacgtgaccgggagtccgtgcatggggatcaagatg
atggcggacagagctcgagatcaaggcatccacattttctcggtggcggcgtccaggagc
atcgatgagctggggatgagggatatagccagctcccccacagaggtgtaccgtgacaac
tacatcgtcatggaggtcgttggcgggaagcccagactcagcaccgaatccattgatcag
atcatcaaagtcatgaaatatcaagcctacttacagtgttataaacctacttgtttggcg
gttcctgggatcccgggacgaaaagggtcgtcaggtccaaaaggagcaaaaggagacaga
ggtaagactgggcaaaaaggtgaaaaaggtagacagggggatcctgggattgaaggtccc
atcggacgtcccgggttaaagggggaaattggttttaagggtgaaaagggagaacgggga
ttaattggagcaaagggtgtggccggagcgcctggaaggaacggaaccgacggacaaaag
ggtaaaatgggccgaattggagttcctggttgcaaaggtgatctaggtgacaagggaccg
gatgggtacccaggagaatttggcaggcctggacccccaggtgttgaaggagaaaagggt
gacccaggtctccctggaaaaccgggccctcctggcccagagggtgaaagaggaccacgg
ggtgaaaatggaaatcccgggaatccagggccaccaggaggaaaagggattcagggatct
aaaggcagactcggaccaaacggcgacctgggcaggagaggaggtcctggagtaaaaggg
gcaaaaggacctaatggacaaaaaggagcaaaaggtgaacgaggaccatatggagaacgg
ggtcagcctggggaagaaggatttaatggagctaagggagaccagggactaccaggaccc
aggggccagccgggagaaccgggccagcctggaggaaatggcactgcgggacatccagga
gatcctggaccaagaggagaccccggttcacttggcccaaagggcgacaaagggcgaaca
ggattcggctatccaggaccgagaggaccctccggaagtacaggcgagcgaggtaacaaa
gggcccagaggaagcagaggagaatgtggcgctaaaggggagcctggagataatggacct
gaaggagaaccgggagaaccaggcccgccaggagagccgggggagcgaggaccccaggga
gacgctggaaaggatggtggtccgggacccatcggcgatcctgggctcactgactgcgac
gtcatgacgtacatcagggagacgtgtggttgctgcgactgtgagaagcactgtggagct
ctggacattgtgtttgtgatcgatagctcggaaagtgttgggctgatgaacttcaccctg
gaaaagaactttgttatcaacaccatcaacaggatggggtccatggcctccgaccctgca
tcaccaaccggcacaagagttggagttgtgcagttcagtcatgaagggaccttcgaggcc
attcgtcttgacgacccaaccataacctccatatcggcctttaaaatggcagtgaagaat
ctgcagtggattgccgggggcacgttcacaccctctgctctcagatttgcctatgacaac
ctgattaagggcagcaagagatcccgtgccaagatatccgtcgtcgtggtcactgacggc
cgctttgaccctcgggacgatgacaaccagctcaggtacctttgcaacgaccccgacgtg
acggtgaacgccatcggggttggagacatgtttgataagagacatgacagtgagaccctt
gtgtcaatagcttgcaacaataagagcagaatcactgagatgaagcaatacaccgacttg
gtggctgaggatttcattgagaagatggagactgtgctctgtcctgatccagtaattaaa
tgtccagatcttccctgtaaaactgaactagacgtagctccatgtgttggacgacccgta
gatctggtaattcttctggacggctccgagcgtctcgggatggagaacttcaaccaggtc
cgtaattttgtggagagtgtgacacacaaactggcaatggccaaggggaagaatgatcga
aactgggctcgtctggcactgatacagtttggcaaagaggaggaaaatcaagtggccttc
cctctaacacatgatcgtgacgccatcgcttcaggtctggcaagtttaacatacctggat
tcttcttcagccgtggggcctgccatcatctacaccatcaataaccttgtgggtaaagga
agcactcgcaaaacgaggcgtggtgctgaggtttcgtttgttttcgtcacggatggcgtc
actaacggcaccatcctggatgaggccgtcagtgcgatgcacagggaacagattgtttcc
actgtgatcgccacaggaagtgatgttgatcaagaagtcctgacaaaactagctatggac
aatcaggaggccatcttcaaagtacaaaaattctctgacgtgctacaaactaggatgttt
aaccgtttcatccggtgggtgtgttga
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integrated database retrieval system
