Klebsiella oxytoca CAV1374: AB185_33690
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Entry
AB185_33690 CDS
T04534
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
koc
Klebsiella oxytoca CAV1374
Pathway
koc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
koc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB185_33690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
koc03019
]
AB185_33690
03016 Transfer RNA biogenesis [BR:
koc03016
]
AB185_33690
Enzymes [BR:
koc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AB185_33690
Messenger RNA biogenesis [BR:
koc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB185_33690
Transfer RNA biogenesis [BR:
koc03016
]
Prokaryotic type
tRNA degradation factors
AB185_33690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
HTH_12
RNase_II_C_S1
TFIIE_beta
Rho_RNA_bind
AlkZ-like
OB_Dis3
MetOD2
Motif
Other DBs
NCBI-ProteinID:
AKL38566
LinkDB
All DBs
Position
complement(6083164..6085614)
Genome browser
AA seq
816 aa
AA seq
DB search
MSQDPFLDRESEKYANPIPSREFILDHLAKREKPASRDELAIELNIEGEEQQEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTGQIVGRYFTDAGVGFVVPDDSRLSFDILIPP
EQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYVWPPA
VEKQVAGLKEQVPEEAKQGRVDLRSLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDGEARSRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
AKGRLTGFKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDGA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAEEP
ALFRIHDKPSTEAITAFRSVLAELGLELPGGNKPEPRDYAELLTSIADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGHKGNSTETG
GWHYSMDEMLQLGAHCSMTERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTEREKAKKGGAGKSSGRRRQAGKQVNFEPDSAFRKQKGQSQPKA
AQPKGEKKAKKPSEKTQKIAAATKAKRAAKKKNIAE
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaagatcctttcctggaccgcgaatctgaaaaatacgctaatccaatcccgagc
cgggaatttatcctcgatcatttagcaaaacgcgaaaaaccggctagccgagatgagctg
gcaatagagctgaatattgaaggcgaagaacaacaagaagcattgcgccgcagactgcgc
gcaatggaacgcgatggtcagctggtctttacgcgtcgtcagtgctatgcgctgccggaa
cgtcttgacctgctgaaagggaccgttatcggtcatcgcgatggttatggcttcctgcgc
gttgaaggccgtaaagatgacctgtatctgtcgtccgagcagatgaaaacctgtattcac
ggcgatcaggtgctggcgcagccgctgggcgccgaccgtaaaggccgtcgcgaagcgcgt
attgtccgcgtactggtgccaaaaacgggccagattgtgggccgctactttaccgatgcg
ggcgttggcttcgtggtgccggatgacagccgcctgagcttcgatatcctgatccccccg
gaacagatcatgggcgcgcgaatggggtttgtggtggtggttgagctgacccagcgccca
acccgccgcaccaaagcggtcggcaagatcgttgaggtcctcggcgacaatatgggtacc
ggcatggcggtcgatatggccctgcgcacccatgaaattccctacgtctggccgccagcg
gtcgaaaaacaggtcgccggcctgaaagaacaggtaccggaagaggcgaaacaagggcgc
gttgatttacgtagcctgccgctggtcaccattgatggcgaagacgcccgtgactttgat
gatgccgtgtactgcgagaagaaacgcggcggtggctggcgtctgtgggtggcgatcgcc
gatgtgagctactacgtgcgtccgggtacgccgctggatggcgaagcgcgcagccgcggc
acgtcggtctacttcccgtctcaggtggttccgatgctgcctgaagtgctctctaacggc
ctgtgttcactgaatcctcaggtcgacaggctctgtatggtttgtgaaatgacgatttcg
gccaaggggcgtctgaccggcttcaaattctacgaagcggtgatgagctcccatgcccgt
ctgacctataccaaagtctggcatatgctgcagggcgaccaggatctgcgtgagcagtac
gcgccgctggttaagcatattgaagagctgcataacctctacaaagtgctggacggcgcg
cgtgaagagcgcggcggtatctcatttgagagtgaagaagctaaattcatctttaatgct
gaacgccgcattgaacgtattgagcagactcagcgtaacgacgcgcacaagctgattgaa
gagtgcatgatcctggcgaacatctccgctgcgcgcttcgttgagaaggccgaggaaccg
gcgctgttccgtatccatgacaaaccgagtacggaagcgattaccgcattccgttcggtg
ctcgcggagctggggcttgaactgcctggcggcaacaagccggagccgcgcgactatgcg
gaattactgacctctatcgccgatcgtccggatgcagagatgctgcaaaccatgctgctg
cggtcgatgaaacaggcgatatacgacccggaaaaccgcggccactttggtctggcgctg
caatcctatgcccacttcacctcgccgattcgccgctatcctgacctttcgctgcatcgc
gcgatcaagtatttactggcgaaagagcagggacataaaggcaatagcaccgagaccggc
ggctggcactacagcatggacgagatgctgcagctgggggcgcactgttcaatgaccgag
cgtcgtgctgatgaagcgacgcgcgatgtttcggactggctgaagtgtgatttcatgctg
gatcaggtgggtaacgtctttaagggcgtgattgccagcgtgaccggctttggtttcttc
gtccgtctggatgagctgtttattgatggtctggtgcacgtctcttccctcgataacgac
tactaccgcttcgatcaggtcggacagcgtctaattggtgaatccggcggccagacctat
cgactgggcgatcgcgtggaagtgcgcgttgaagcggtcaacatggacgagcgtaaaatt
gacttctcgcttatctccagcgagcgcgcgccgcgcaacgtcggtaagaccgagcgtgaa
aaagcgaagaaaggcggcgcaggtaaatcttccggacgtcgccgtcaggcgggcaagcag
gtaaacttcgagccggatagcgcattccgcaaacagaaaggtcagtctcagccgaaagcc
gctcagccaaaaggcgagaagaaagcgaaaaagccgtcggagaaaacccagaagatagcc
gcagcgaccaaagccaagcgcgcggcgaagaaaaagaatatcgctgagtag
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