Kibdelosporangium phytohabitans: AOZ06_37985
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Entry
AOZ06_37985 CDS
T04088
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kphy
Kibdelosporangium phytohabitans
Pathway
kphy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AOZ06_37985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kphy03400
]
AOZ06_37985
Enzymes [BR:
kphy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AOZ06_37985
DNA repair and recombination proteins [BR:
kphy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AOZ06_37985
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
ALG15374
UniProt:
A0A0N9IFW4
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All DBs
Position
8406999..8407877
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AA seq
292 aa
AA seq
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MAERQLRLSNLEKPLYPDGFTKAQVIGYYSQLAPLLLPLLAGRPVTFVRYPDGTDGEGFY
EKNAAAGAPAWLRTVSLTGSGSRGSGGPVNYPLIDDLPSLVWAANLAALELHVPQWTVTS
DGARGIPDRLVFDLDPGEGATVVDCAAVATRIRDALVHDGLTPYATTSGSKGMQLYAGVP
GGPRSTSAYAKALAERLARESPDRVTAKMTKALRAGKVFIDWSQNNPAKTTISPYSLRGR
ATPTVATPVTWDEVGACRREDELVFTAGDVAARVERFGDILAGLSQSGAGSP
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
gtggccgagcggcagctgcggctgtccaatttggagaagccgctctacccggacgggttc
accaaggcccaggtgatcggttactacagccagctcgccccgctgctgctgccgttgctg
gccggtcggcccgtcacgttcgtgcgctaccccgacggcaccgacggcgaggggttctac
gagaagaacgccgccgcgggtgcgccggcctggctgcggaccgtgtcgttgaccggcagc
ggttcgcgtggcagcggcggccccgtcaactacccgctcatcgacgacctgccgtcattg
gtgtgggcggccaacctcgccgcgctggagcttcacgtaccacagtggacggtcacatcg
gacggtgcgcgcggcatacccgatcggctggttttcgacctcgaccccggtgagggtgcc
acagtcgtcgactgcgccgctgtggccacccgcatccgcgacgcccttgtccacgatgga
ctcacaccgtacgccaccacgtccggctccaagggaatgcagctctacgcgggcgttccg
ggtggtccacgctccacttccgcctacgcgaaggcgctcgccgaacgcctcgcgcgggaa
tctcccgatcgggtgaccgcgaagatgaccaaggcgttgcgggccggcaaggtgttcatc
gactggagccagaacaacccggcgaagacgaccatctcgccgtattccctgcgcggccgg
gcgacaccgaccgtggcgaccccggtgacctgggacgaagtcggcgcgtgccggcgtgaa
gacgagctcgtgttcaccgccggagacgtcgccgcgcgcgtcgaacggttcggggatatc
ctcgctgggctgtcgcagtccggggccggatcgccctga
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