Kribbella qitaiheensis: F1D05_11260
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Entry
F1D05_11260 CDS
T06749
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kqi
Kribbella qitaiheensis
Pathway
kqi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
F1D05_11260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kqi03400
]
F1D05_11260
Enzymes [BR:
kqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
F1D05_11260
DNA repair and recombination proteins [BR:
kqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
F1D05_11260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QNE18366
UniProt:
A0A7G6WWK1
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All DBs
Position
2488459..2489385
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AA seq
308 aa
AA seq
DB search
MAAGQTQLTTEVDGQTMKLTNLGKVLYPQTGFTKAEVIDYYHQVASLLLPHLSDRPLTRK
RWPDGTGAAYFFEKNAPRGTPAWVRTVTLPTPGSSTGRDEADFVVADDVQTIVWLANLAA
LELHVPQWRIGLSDDGKTPTADLIVFDLDPGPGATIVECCDVALALRELLNHFGLEGWPK
TSGNKGMHLYVPIEPATSRSTSAFARQLAEQLAEALPENVTANMTKALRPGKVFIDWSQN
AGAKTTLAPYSLRGAEEPRVSTPIDWDEVAAATSVEELTFLPADVLARIEEYGDVLEGLY
DDPRPLPS
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcagccggacagacgcaactgaccaccgaggtcgacgggcagacgatgaagctcacc
aacctcggcaaggtgctctatccccagacggggttcaccaaggccgaggtgatcgactac
taccaccaggtggcctcgctgctgctgccacacctgtcggatcggccgctgacccgcaag
cgctggccggacggcaccggcgcggcgtacttcttcgagaagaacgctcctcggggtacg
ccggcctgggtccgcacggtgacgctgccgacccccggtagctctaccgggcgggacgag
gccgacttcgtcgtggcggacgacgtccagaccatcgtgtggctcgccaacctggccgcg
ctcgaactgcacgtcccgcagtggcggatcggactctccgatgacggcaagacgccgacc
gccgacctgatcgtgttcgacctcgacccgggtccgggagcgaccatcgtcgagtgctgc
gacgtggccctggcgctgcgcgaactgctgaaccatttcggcctcgaaggctggccgaaa
acctccggaaacaaggggatgcacctctacgtgccgatcgagccggcgacgtcccgcagt
accagcgcgttcgccaggcaactggccgagcagctggccgaggcgttgccggagaacgtg
accgcgaacatgacgaaggcgctccggcccggcaaggtgttcatcgactggagccagaac
gccggcgccaagaccacgctcgcgccgtactcgctgcgcggcgccgaggagccgcgggtc
tccacgccgatcgactgggacgaggtggccgcggcgacctcggtggaagaactcaccttc
ttgccggccgacgtgctggcccggatcgaggagtacggggacgtgctcgagggcctgtac
gacgacccgcgaccattgccgtcctga
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