Kineococcus radiotolerans: Krad_1315
Help
Entry
Krad_1315 CDS
T00562
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
kra
Kineococcus radiotolerans
Pathway
kra03030
DNA replication
kra03410
Base excision repair
kra03420
Nucleotide excision repair
kra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
kra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Krad_1315
03410 Base excision repair
Krad_1315
03420 Nucleotide excision repair
Krad_1315
03430 Mismatch repair
Krad_1315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
kra03032
]
Krad_1315
03400 DNA repair and recombination proteins [BR:
kra03400
]
Krad_1315
Enzymes [BR:
kra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Krad_1315
DNA replication proteins [BR:
kra03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Krad_1315
DNA repair and recombination proteins [BR:
kra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Krad_1315
NER (nucleotide excision repair)
GGR (global genome repair) factors
Krad_1315
MMR (mismatch excision repair)
DNA ligase
Krad_1315
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Krad_1315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HOIP-UBA
Auto_anti-p27
BRCT_2
DUF983
Motif
Other DBs
NCBI-ProteinID:
ABS02803
UniProt:
A6W7L4
LinkDB
All DBs
Position
complement(918475..920565)
Genome browser
AA seq
696 aa
AA seq
DB search
MDTVDGGDVPSEARHRWEDLVAQIEAARFAYYVRNSSPLSDGQYDALERELRALEEQHPQ
LRTPDSPTQTVGGTFSTEFTTVDHPERMLSLDNAFSTDELSAWAARVEREVGAGARYLCE
PKIDGLAIDLVYEDGRLVRGVTRGDGRTGEDVTFNVRTVEDVPHRLTGADVPEFLEVRGE
VFFHLDGFAAINAGLVEAGKPPFANPRNAAAGSLRQKDPRVTATRPLRMLVHGVGARRGM
ENDTQSGAYEKLAAWGLPTSPRVKVVDTLDEVAEYVRFYGEHRHDVEHEIDGVVVKVDQV
PLQRRLGSTSRAPRWAIAYKYPPEEVTTSLLDIQVNVGRTGRVTPFAVLEPVKVAGSTVA
MATLHNASEVVRKGVLIGDTVVVRKAGDVIPEVLGPVVESRTGAEREFVMPTVCPECGTP
LAHQRADDVDIRCPNSRSCPAQLRERVFHLAGRGSFDVEALGDKAAAALLQAGVIADEGD
LFTLTEDDLVGVPLFTTKAGTVSANGRRLLANLHDRKDQPLWRVLVGLSIRHVGPTAARA
LADRFGSMEAIEAATAEDIASAEGVGPTIAEAVVEWLAVDWHRDVVRKWREAGVRMADER
DESTPRTLEGLTIVVTGSLSGFSRDEAKEAVLSRGGKASSAVSKKTSFVVVGEAAGSKAD
KAEQLGVPVLDEEGFVALLEGGPDAVARPAEEPGQG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtggacacggtcgacggcggggacgtccccagcgaggcgcggcaccggtgggaggacctc
gtcgcgcagatcgaggcggcccgcttcgcctactacgtgcgcaactcctcgccgctgagc
gacgggcagtacgacgcgctggagcgggagctgcgcgcgctggaggagcagcacccgcag
ctgcgcaccccggactccccgacgcagacggtgggcgggacgttctccaccgagttcacc
accgtcgaccaccccgagcggatgctcagcctggacaacgccttctccaccgacgagctg
tcggcgtgggcggcccgggtggagcgcgaggtcggcgccggcgcccgctacctgtgcgag
ccgaagatcgacggcctggccatcgacctcgtctacgaggacgggcgcctggtgcggggg
gtgacccgcggcgacggccgcacgggggaggacgtcaccttcaacgtccgcaccgtcgag
gacgtcccgcaccggctcaccggggccgacgtccccgagttcctcgaggtgcgcggggag
gtcttcttccacctcgacggcttcgcggcgatcaacgccggtctcgtcgaggcggggaag
ccgccgttcgccaacccccgcaacgcggccgcggggtcgttgcggcagaaggacccccgc
gtcaccgcgacccggccgctgcggatgctcgtccacggcgtcggcgcgcgccggggcatg
gagaacgacacccagtccggcgcctacgagaagctcgcggcctgggggctgccgacctcg
ccgcgggtgaaggtcgtggacaccctcgacgaggtcgccgagtacgtccgcttctacggc
gagcaccgccacgacgtggagcacgagatcgacggggtcgtcgtcaaggtcgaccaggtc
ccgctgcagcgccgcctcggcagcacctcccgggccccgcggtgggcgatcgcctacaag
tacccgcccgaggaggtgaccacgagcctgctggacatccaggtcaacgtcgggcgcacc
ggccgggtcaccccgttcgcggtgctggaaccggtcaaggtcgccgggtccaccgtcgcg
atggccaccctgcacaacgcctccgaggtcgtgcgcaagggcgtcctcatcggcgacacc
gtcgtcgtgcgcaaggccggcgacgtgatccccgaggtcctcggtcccgtcgtggagtcc
cgcaccggcgccgagcgggagttcgtcatgccgacggtgtgccccgagtgcggcaccccg
ctggcccaccagcgggccgacgacgtcgacatccgctgcccgaactcccgcagctgcccc
gcgcagctgcgcgagcgcgtcttccacctcgccgggcgcggctccttcgacgtcgaggcg
ctgggcgacaaggcggcggcggcgctgctgcaggccggggtcatcgccgacgagggcgac
ctgttcaccctcaccgaggacgacctcgtcggcgtcccgctgttcaccacgaaggcgggg
acggtctcggccaacggccggcgcctgctggcgaacctgcacgaccgcaaggaccagccc
ctgtggcgggtcctggtcgggctctcgatccggcacgtggggcccaccgccgcgcgcgcc
ctcgccgaccggttcgggtcgatggaggcgatcgaggcggccaccgccgaggacatcgcc
tccgcggagggggtcgggccgaccatcgccgaggccgtcgtggagtggctggccgtcgac
tggcaccgcgacgtggtccgcaagtggcgcgaggccggggtccggatggccgacgagcgc
gacgagtccaccccgcgcaccctggagggcctcacgatcgtcgtcaccgggtcgctgagc
gggttctcccgcgacgaggccaaggaggcggtcctgtcccgcgggggcaaggcctccagc
gcggtgtcgaagaagacgagcttcgtcgtcgtgggggaggccgcggggtccaaggcggac
aaggccgagcagctgggggtgccggtcctggacgaggagggcttcgtcgccctgctggag
ggcgggcccgacgcggtggcgcgcccggcggaggaacccggccaggggtga
DBGET
integrated database retrieval system
