Kineococcus radiotolerans: Krad_4154
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Entry
Krad_4154 CDS
T00562
Name
(GenBank) DNA primase small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kra
Kineococcus radiotolerans
Pathway
kra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Krad_4154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kra03400
]
Krad_4154
Enzymes [BR:
kra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Krad_4154
DNA repair and recombination proteins [BR:
kra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Krad_4154
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABS05617
UniProt:
A6WFM8
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All DBs
Position
complement(2727455..2728681)
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AA seq
408 aa
AA seq
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MASPQTVLELAGREVVVTNPDKVVFARSGTTKLDLVRYYLSVADGVLRGVRGRPMVLKRF
VKGIEAEAVFQKRAPEKRPDWIEVAELRYARGTSAAETVVRDEASLAWVLNLNCVDLNPH
PVLAEDLEHPVELRIDLDPQPGVDWHQIVDVAFVAREVLADHGLTAWPKTSGSRGFHVYA
PIDPVWSYPEVRLAAETVAREVEDRARGLATSRWWKEERGEGVFVDFNQNAKDRTVASAY
SVRATPDARVSTPLTWDEVRDVRPEDHTLLTVPRRWAELGGDPWAGMDGTGGSLEALLAL
AERMGPAEKAPKGTGSRTVTMPLIEVARARTKPEVLAGLESWKAKHPDVVPLLTESDVLV
DGMRGSSSLWYRVRVNLRHVPEAQRPPQAALEVDFDPWARYRGNRPTG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtggcgtccccgcagaccgtcctggagctcgccggccgcgaggtcgtggtcacgaacccg
gacaaggtcgtgttcgcccgcagcgggaccacgaagctggacctcgtccgctactacctg
agcgtcgccgacggcgtcctgcgcggggtccgcggccggccgatggtgctgaagcggttc
gtcaagggcatcgaggccgaggcggtgttccagaagcgggccccggagaagcgcccggac
tggatcgaggtcgcggaactgcgctacgcgcgggggacgtcggcggccgagacggtggtg
cgggacgaggcctcgctggcctgggtgctcaacctcaactgcgtcgacctcaacccccac
ccggtgctggccgaggacctcgagcacccggtggagctgcgcatcgacctcgacccgcag
cccggcgtggactggcaccagatcgtcgacgtcgcgttcgtcgcccgcgaggtcctcgcc
gaccacggcctgaccgcgtggccgaagacgtcggggtcgcgggggttccacgtctacgcc
ccgatcgacccggtgtggtcctacccggaggtccggctggcggccgagacggtcgcgcgc
gaggtcgaggaccgggcccggggcctggccacgagccggtggtggaaggaggaacgcggc
gagggcgtgttcgtcgacttcaaccagaacgccaaggaccgcaccgtcgcctccgcctac
tcggtgcgcgcgacccccgacgcccgggtctcgaccccgctgacgtgggacgaggtgcgc
gacgtccggcccgaggaccacaccctcctcaccgtcccgcggcgctgggcggagctcggc
ggcgacccgtgggcggggatggacgggacgggcggttcgctggaggccctgctggccctg
gccgagcggatgggccccgcggagaaggccccgaagggcaccgggtcgcggacggtgacg
atgccgctgatcgaggtcgcccgggcccggacgaagccggaggtcctcgccggtctggag
tcgtggaaggcgaagcaccccgacgtcgtcccgctgctcaccgagtccgacgtcctggtg
gacgggatgcgcggcagcagctccctctggtaccgggtgcgggtgaacctccggcacgtc
cccgaggcgcagcggccgccgcaggcggcgctggaggtcgacttcgacccctgggcgagg
taccgcgggaaccggcccaccggctga
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