Kocuria rhizophila: KRH_05600
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Entry
KRH_05600 CDS
T00701
Symbol
deaD
Name
(GenBank) ATP-dependent DEAD-box RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
krh
Kocuria rhizophila
Pathway
krh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
krh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KRH_05600 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
krh03019
]
KRH_05600 (deaD)
03009 Ribosome biogenesis [BR:
krh03009
]
KRH_05600 (deaD)
Enzymes [BR:
krh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KRH_05600 (deaD)
Messenger RNA biogenesis [BR:
krh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KRH_05600 (deaD)
Ribosome biogenesis [BR:
krh03009
]
Prokaryotic type
rRNA helicases
KRH_05600 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
UvrA_inter
GET4
Motif
Other DBs
NCBI-ProteinID:
BAG28907
NITE:
KRH_05600
UniProt:
B2GI52
LinkDB
All DBs
Position
617363..619522
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AA seq
719 aa
AA seq
DB search
MPTDNIPENETAHTVAPASEPGETTVVDAGAAEQAPNDAAGQVPAEAPAADAASSTAGPA
QASAEKPAASSEATTPTFAELGVDGRVLAALDEVGYEYPSPIQAATIPALLSGRDVVGLA
QTGTGKTAAFAVPALSKLAELSDLHGPQRSTRVLVLAPTRELALQVAEAFGSYATHLEDF
TVLPVYGGSSYGPQLAGLKRGAQVVVGTPGRVIDHLSKGSLKLDDIAYVVLDEADEMLRM
GFSEDVEKILAQTPVEKQVALFSATMPKAIRRIAQQYLRDPQEITVKAKTTTGTNTRQRY
MQVMGPHKLDAMTRVLEVEDYDGVIVFVRTKAATEEIADKLKARGYTAAAINGDIPQNLR
ERTVDSLREGKIDILVATDVAARGLDVERISLVVNYDIPHDTESYVHRIGRTGRAGRKGE
AILFMTPREKYLLRAIEKATRQPVEQMRVPTTDEVNQTRKDNFAQQIEETIESEDLGLFR
ELVERYESEHDVDAVEIAAALAVIAQNGRPFLVEDLPEMPQRKRDRERRDGDGPRNRRSP
GDEAGMKTYKLAVGHRDRVVPGAVVGALTHEGGLNGSQIGAIDIRPTFTLVGLPENLPAG
TLDKLSNTQINGAPIRIQEDRGPGGARSGGGNRFRGGDRDRGPRNDRGDRGGYRGDRGGY
RDDRGGYRDDRGDRGGYREDRGGYRDDRGGGRPRGGGSSYQDRPRKKSYGRNNGGYSGR
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
gtgcccactgacaacatccccgagaacgagaccgcccacaccgtggctcccgcgagcgag
ccgggcgagacgacggtcgtcgacgccggcgccgccgagcaggcccccaacgacgccgcc
gggcaggttcccgccgaggcccccgccgccgacgcggcgtcgtccaccgccgggcccgcg
caggcgtccgccgagaagcccgcggcctcctccgaggccaccacgcccacgttcgccgag
ctcggcgtggacggccgcgtgctggccgccctggacgaggtgggctacgagtacccctcg
cccatccaggccgccaccatccccgcgctgctcagcggccgggacgtcgtgggcctggcc
cagaccggcaccggcaagaccgccgcgttcgcggtgcccgcgctgtccaagctcgcggag
ctctcggacctgcacggcccgcagcgcagcacccgcgtgctcgtgctggcccccacccgt
gagctcgcgctgcaggtggccgaggcgttcggctcctacgccacgcacctggaggacttc
accgtgctgcccgtgtacggcggctcctcctacggtccgcagctggccgggctcaagcgc
ggcgcgcaggtggtcgtgggcacgcccggccgtgtgatcgaccacctctccaagggctcg
ctcaagctcgacgacatcgcgtacgtggtgctggacgaggccgacgagatgctgcgcatg
ggcttctcggaggacgtggagaagatcctcgcccagacccccgtggagaagcaggtggcc
ctgttctccgcgaccatgcccaaggccatccggcggatcgcgcagcagtacctgcgggat
ccccaggagatcacggtcaaggccaagaccaccacgggcaccaacacccgccagcgctac
atgcaggtcatgggcccccacaagctggacgccatgacccgcgtgctcgaggtcgaggac
tacgacggcgtgatcgtcttcgtgcgcaccaaggccgccaccgaggagatcgcggacaag
ctcaaggcccgcggctacaccgccgccgcgatcaacggcgatatcccgcagaacctgcgc
gagcgcaccgtggactccctgcgcgagggcaagatcgacatcctcgtggccacggacgtg
gccgcgcgcgggctggacgtggagcggatctccctggtggtcaactacgacatcccccac
gacaccgagtcctacgtgcaccgcatcgggcgcaccggccgcgccgggcgcaagggcgag
gccatcctgttcatgacgccgcgcgagaagtacctgctgcgcgccatcgagaaggccacc
cgtcagcccgtggagcagatgcgcgtgcctaccacggacgaggtcaaccagacccgcaag
gacaacttcgcgcagcagatcgaggagaccatcgagtccgaggacctcgggctgttccgc
gagctggtggagcgctacgagtccgagcacgacgtggacgccgtcgagatcgccgcggcc
ctggccgtgatcgcgcagaacggccgcccgttcctcgtggaggacctccccgagatgccc
cagcgcaagcgggaccgtgagcgccgcgacggggacggaccccgcaaccgccgctccccg
ggcgacgaggccggcatgaagacctacaagctggccgtgggccaccgggaccgcgtggtg
cccggtgccgtggtgggtgcgctcacgcacgagggcgggctcaacggctcgcagatcggc
gcgatcgacatccgccccacgttcaccctggtgggcctgcccgagaacctgcccgcgggc
accctcgacaagctctccaacacccagatcaacggcgcccccatccgcatccaggaggac
cgcggacccggtggtgcccgcagtggcggcggcaaccgcttccgcggcggggaccgtgac
cgcggcccccgcaacgaccgtggggaccgcggcgggtaccgcggtgaccgtggcggctat
cgggacgaccgcggcggctaccgggacgatcgcggtgaccgtggcgggtaccgcgaggac
cgcggtggctaccgtgacgaccgtggtggcgggcgcccccgcggcggcgggtcctcctac
caggaccgtccccgcaagaagagctacggccggaacaacggcggctactcgggccgctga
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