Kitasatospora setae: KSE_05320
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Entry
KSE_05320 CDS
T01648
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ksk
Kitasatospora setae
Brite
KEGG Orthology (KO) [BR:
ksk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KSE_05320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksk03400
]
KSE_05320
Enzymes [BR:
ksk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KSE_05320
DNA repair and recombination proteins [BR:
ksk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KSE_05320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAJ26378
NITE:
KSE_05320
UniProt:
E4N597
LinkDB
All DBs
Position
complement(606461..606982)
Genome browser
AA seq
173 aa
AA seq
DB search
MIDLDPAGDDFEPVRRAAAATRGLLDELGLPADLMTTGSRGLHVLVRLDRRADFDEVRAF
ARDAAAVLARRHPALLTTEARKAARRGRLYLDVQRNAYGQNAVTPYAVRALPGAPVATPL
AWDELDDPALTARRWTIATLPERLAAPDPWQPARRARSLGPARRRLERLERLG
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacctcgacccggccggcgacgacttcgaaccggtccgccgggccgccgccgcg
acccgcggactgctcgacgaactcggcctccccgccgacctgatgaccaccggttcgcgc
ggcctgcacgtcctcgtccggctcgaccgccgcgcggacttcgacgaggtccgggccttc
gcccgggacgccgccgccgtgctcgcccgccgccaccccgccctgctcaccaccgaggcc
cgcaaggcggcccgccgcggccggctctacctcgacgtccagcgcaacgcctacggccag
aacgccgtcaccccctacgccgtccgcgccctccccggcgccccggtcgccaccccgctg
gcctgggacgaactggacgaccccgccctcaccgcccgccgctggaccatcgccaccctc
ccggaacgcctcgccgccccggacccctggcagccagcccgccgcgcccgctcgctgggc
ccggcccggcggcggctggaacggctggaacggctgggctga
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