Kitasatospora setae: KSE_53980
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Entry
KSE_53980 CDS
T01648
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ksk
Kitasatospora setae
Pathway
ksk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ksk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSE_53980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ksk03019
]
KSE_53980
03400 DNA repair and recombination proteins [BR:
ksk03400
]
KSE_53980
Enzymes [BR:
ksk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSE_53980
Messenger RNA biogenesis [BR:
ksk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSE_53980
DNA repair and recombination proteins [BR:
ksk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KSE_53980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
AAA_30
RecQ_Zn_bind
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAJ31173
NITE:
KSE_53980
UniProt:
E4NI43
LinkDB
All DBs
Position
complement(6019712..6021907)
Genome browser
AA seq
731 aa
AA seq
DB search
MQKRELHPTTPADREAVRAAAEAVLRELAGSGAVLREDQWRAIEALVVDGRRALVVQRTG
WGKSAVYFIATALLRARGAGPTVIVSPLLALMRNQVDAAARAGIRARTINSANPEEWSQI
QQEVADGLVDVLLVSPERLNNPDFRDHVLPKLAASTGLLVVDEAHCISDWGHDFRPDYRR
LRTMLAELSPGVPVLATTATANARVTADVAEQLGTGAGDAQALVLRGPLDRESLSLAVLP
LPDPAHRLAWLADHLPDLPGSGIVYTLTVAAAEEVTEFLRGRGYQVAAYSGRTEDAERRE
AETALLENRVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVDRAEVL
LLPGREDEAIWRYFASIGFPAEEQVRRTLDALSEAGRPLSTAALETSVDLRRTRLETMLK
VLDVDGAVRRVRGGWESTGETWQYDAARYAKVARAREAEQQAMREYVATGGCRMEFLRRQ
LDDPEAAPCGRCDRCGPPRHSAEVSAGALDAARAALGRPGVSFETRRMWPTGMESLGVPL
KGRIPPAQQAEPGRALGRLSDIGWGGRLRSLLDERSPDGPLPREVLDAMVGVVADWARGP
GGWAGPGGPDGQRLDRPVGVVALDSSTRPQLVSDLAGGLASIGRMSLLGRIEYATGEPPH
GPRSNSAQRLRSVAGALALPPGLAEALAAAPGPVLLVDDLVDSGWTLTVAARLLRQAGAT
AVLPLVLAVRG
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcgcgagctccacccgaccaccccagccgaccgcgaagccgtccgggccgcc
gcggaagccgtgctgcgcgagctcgccggctccggcgcggtgctgcgcgaggaccagtgg
agagccatcgaggccttggtggtggacggccgccgcgccctggtcgtccagcggaccggc
tggggcaagtccgccgtctacttcatcgccacggcgctgctccgcgcgcgcggcgccggc
ccgaccgtcatcgtctccccgctgctcgccctgatgcgcaaccaggtcgacgcggccgcc
cgggcgggcatccgcgcccggacgatcaactcggccaaccccgaggagtggtcgcagatc
cagcaggaggtcgccgacggcctggtcgacgtcctgctggtcagcccggagcggttgaac
aaccccgacttccgcgaccacgtgctgcccaaactggccgcctccaccggcctgctggtg
gtcgacgaggcgcactgcatctccgactgggggcacgacttccggcccgactaccggcgg
ctgcgcaccatgctggccgagctctcccccggcgtcccggtgctggcgaccacggcgacc
gcgaacgcccgggtcacggcggacgtcgcggagcagttgggcaccggcgccggcgacgcg
caggccctggtgctgcgcgggccgctggaccgggagagcctcagcctggcggtgctgccg
ctgcccgacccggcgcaccggctggcctggctcgccgaccacctgcccgacctcccgggc
tccggcatcgtgtacaccctcacggtggccgccgccgaggaggtcaccgagttcctgcgc
gggcgcgggtaccaggtggccgcctactccgggcggaccgaggacgcggagcgccgcgag
gccgagacggcgctgctggagaaccgggtcaaggcgctggtcgccacctccgccctcggc
atgggcttcgacaagccggacctcggcttcgtggtgcacctcggctcgccgagctccccg
atcgcctactaccagcaggtcggccgggccggccgcggcgtggaccgggccgaggtcctg
ctgctgccgggccgggaggacgaggcgatctggcggtacttcgcctcgatcggcttcccc
gccgaggagcaggtccgccgcacgctggacgcgctctccgaggcgggccgcccgctctcc
accgccgccctggagacctcggtcgacctgcgccgcaccaggctggagaccatgctcaag
gtcctcgacgtggacggcgcggtccgccgggtgcgcggtggctgggagtccaccggcgag
acctggcagtacgacgccgcgcggtacgccaaggtcgcccgggcccgcgaggccgagcag
caggcgatgcgggagtacgtggccaccgggggctgccggatggagttcctgcgccgccag
ctcgacgacccggaggcggccccgtgcggccgctgcgaccgctgcggcccgccccggcac
tccgccgaggtgtccgcgggcgcgctggacgcggcccgggccgcgctcggccgccccggc
gtctccttcgagacccggcggatgtggcccaccgggatggagtccctgggcgtcccgctg
aagggccggatccccccggcccagcaggccgagccggggcgcgcgctgggccggctgtcc
gacatcggctggggcggccggctgcgttcgctgctggacgagcgctcgccggacgggccg
ctgccgcgcgaggtgctggacgcgatggtcggggtggtcgcggactgggccaggggcccc
ggcggctgggccggccccgggggcccggacgggcagcggctcgaccgcccggtcggcgtg
gtcgcgctcgactcctccacccgcccccagctggtctccgacctggccggcggcctggcc
tcgatcggccgaatgtccctgctcggccggatcgagtacgccaccggggagcccccgcac
ggcccgcgcagcaacagcgcccagcggctgcgctcggtcgccggggcgctcgcgctgccg
ccgggcctggccgaggcactggccgccgcgccgggcccggtcctcctggtcgacgacctg
gtcgactcgggctggacgctgacggtcgccgcccggctgctccggcaggccggcgccacc
gccgtcctgcccctcgtcctggcggtccggggatga
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