Kribbella soli: OG809_39250
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Entry
OG809_39250 CDS
T09724
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ksl
Kribbella soli
Pathway
ksl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ksl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OG809_39250 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ksl03400
]
OG809_39250 (ligD)
Enzymes [BR:
ksl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OG809_39250 (ligD)
DNA repair and recombination proteins [BR:
ksl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OG809_39250 (ligD)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
WUJ71120
LinkDB
All DBs
Position
complement(8029859..8030836)
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AA seq
325 aa
AA seq
DB search
MSPAGPPVLPMMASLGQMPSGSGWSYELKWDGIRVIAEVDDGVCRLWSRNSHDVSGGYPE
LLGLAEAPGLRLPAVLDGEIVTLDEKGAPSFGLLQRRMHVRDPRQLRHLITEVPVSVRLF
DVLRFDGKWLLEATYDDRRGLLDSLDIGDPFWEIPPALQDGSEALDQSAAQGLEGVVAKR
RKSRYLPGRRSSDWIKIKPVQTRDVVLCGWHPGEGNREGTIGSFYCGAYAEPGGELVLIG
KVGSGLDFATLDMLSAELAGLEIDRPSFDPSSIPMTDRRRAHWLDPVLVAEVTFSGWGGD
GRLRHPVWRGLRLDINPETVLVSRN
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgagtccggccggtccgcccgtgctgccgatgatggcgtcgctggggcagatgccatcg
ggttcgggctggtcgtacgaactgaagtgggacggcatccgcgtgatcgccgaggtcgac
gacggcgtgtgccggctctggtcgcgcaacagccacgatgtctccggcgggtacccggag
ctgcttggtctcgccgaagcgccgggcctgcggctgcccgccgtactcgatggtgagatc
gtcacgctggacgagaagggcgcgccgtcgttcggcctgctgcagcggcggatgcacgtg
cgcgatccacgccagctcagacatctgatcaccgaggtgccggtctcggtccggctcttc
gacgtcctccgtttcgacggcaagtggttgctagaggcaacgtacgacgatcgccgcgga
ctgctcgactcgctcgacatcggcgacccgttctgggagatcccgcccgcgctgcaggac
ggttcggaagccttggaccagtccgccgcacaagggctcgaaggcgtcgtcgcgaaacgg
cgcaagtcccgctacctccctggccgtcgcagctccgactggatcaagatcaagccggtg
cagaccagggatgtcgtgctgtgcggatggcatccgggggagggcaaccgcgaagggacg
atcggctcgttctactgcggcgcgtacgccgaacccggcggcgagctcgtgctgatcggc
aaggtcggatccggcctggacttcgcgaccctcgacatgctcagcgccgagctggccggg
ctcgagatcgaccgcccgtcgttcgacccgtcgagcatcccgatgaccgaccggcggcgg
gcacactggctcgatcccgtcctggtcgccgaggtcaccttctccggctggggcggcgac
ggccggctccggcatccggtctggcgtggattgcgcctcgacatcaacccggagacggtt
ctcgtctcgcgaaactga
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integrated database retrieval system
