Kutzneria sp. CA-103260: JJ691_02400
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Entry
JJ691_02400 CDS
T08943
Name
(GenBank) DNA polymerase Ligase (LigD)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
kut
Kutzneria sp. CA-103260
Pathway
kut03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
kut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JJ691_02400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kut03400
]
JJ691_02400
Enzymes [BR:
kut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JJ691_02400
DNA repair and recombination proteins [BR:
kut03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JJ691_02400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
Motif
Other DBs
NCBI-ProteinID:
QUQ62528
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All DBs
Position
271135..272499
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AA seq
454 aa
AA seq
DB search
MADLGEYRRKRDARRTPEPVPAEGPLPAGDNDVFVVQEHHATRLHYDVRLERDGVLVSWA
VPKGLAMSPGAVRLAVHTEDHPMEYASFEGDIPRREYGGGHVSIWDRGTYETHKWTDYEI
DVSFHGSRLDGRFVFIHKEDKDWLVRKRGKQSSTSTMVEVEGRRLKLTNLEKVLYPADGF
TKAHVIDYYRQVAPCLLTHLAARPVTLKRFPDGVDAPSFFEKNASRQAPEWLRTMTLPTP
GSAKGAETLDFAMLDDLPGLVWAANLAALELHVPQWTVGPRGGVRDPDLLVFDLDPGPDT
TVVDCCRAAELIRDLLAADGLTGFPKTSGAKGLQLYVPVRVSNAERTSQYAKSIAQRLAA
DHPDRYVAVMAKSRRSGRVFVDWSQNNPAKTTIAPYSLRAREHPTVSTPVTWREVERCRT
PADLTFTAPDVLARLGKHGDLLANLQKEPGRLPR
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacctgggcgagtaccggcggaaacgggatgcgcggcgcaccccggagccggtg
cccgcggaggggccgctgccggccggcgacaacgacgtttttgtggtgcaggagcaccat
gccacccggctgcactacgacgtgcggctggaacgggacggggtgctggtctcgtgggcc
gtgcccaaggggttggccatgagtcccggcgcggtgcggctggccgtgcacaccgaggac
caccccatggagtacgcctcgttcgagggggacatcccccgtcgcgagtacggcggcggt
catgtgtccatttgggaccgtggcacctacgagacgcacaagtggaccgactacgagatc
gacgtctcgttccacggctcccgtctggacggtcgcttcgtcttcatccacaaggaggac
aaggactggctcgtccgcaagcgcggcaagcagtcctcgacctccaccatggtcgaggtc
gagggtcggcggctgaagctgaccaacctggagaaggtgctctatccggccgacggcttc
accaaggcccacgtcatcgactactaccgccaggtcgcgccgtgcctgctgacccacctg
gccgctcggccggtcaccctgaagcgcttccccgacggcgtcgacgccccgtccttcttc
gagaagaacgcctcccggcaggctcccgagtggctgcgcaccatgaccctgcccactccc
ggcagtgccaagggggccgagaccctcgacttcgccatgctcgacgacctgcccggtctc
gtgtgggccgccaacctcgccgccctggaactgcatgttccacagtggaccgtcggcccc
cggggtggcgtccgggaccccgatctcctcgtcttcgacctcgaccccggtcccgacacc
accgtcgttgactgctgccgggccgccgagctcatccgcgacctgctggccgccgacggc
ctgaccggcttccccaagaccagcggcgccaaggggctgcaactgtacgtgccggtacgg
gtcagcaacgccgagcggacctcccagtacgccaagtccatcgcccagcgcctcgccgcc
gaccaccccgaccgctacgtcgccgtcatggccaagtcccgccgttccggccgggttttc
gtggactggagccagaacaaccccgccaagaccaccatcgccccgtactccctgcgggcc
cgcgaacaccccactgtgtccactcccgtcacctggcgcgaggtcgaacgctgccgcacc
cccgccgacctgaccttcaccgcccccgacgtcctcgcccgactgggcaaacacggggac
ctgctggcgaacttgcagaaggagcccggccgcctgccacgctga
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