Ketogulonicigenium vulgare Y25: EIO_2389
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Entry
EIO_2389 CDS
T01338
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
kvu
Ketogulonicigenium vulgare Y25
Pathway
kvu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
kvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EIO_2389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
kvu03400
]
EIO_2389
Enzymes [BR:
kvu01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EIO_2389
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EIO_2389
DNA repair and recombination proteins [BR:
kvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EIO_2389
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
ADO43477
LinkDB
All DBs
Position
complement(2325436..2326296)
Genome browser
AA seq
286 aa
AA seq
DB search
MPELPEVETVRRGLLPVMEGQVIAAADVRRPDLRWPFPPDMAQRLTGKRVLSLRRRSKYI
LADLDSAETLLIHLGMSGRMLISGVMIGEYEHARALPEKHDHVVLDMAGGARIAFNDARR
FGAMDLMATDAVDQNPLIAVLGPEPFGNDFSPAYLAARLAGRKTPIKSALLDQHIVAGLG
NIYVCEVLFRARIHPARLAGDLTALEADRLVPLIRDVLDEAIRAGGSSLRDYQKTDGTLG
YFQHAFQVYGREGQPCSTPGCIGTVARIVQAGRSSFFCPLCQAIHR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaggttgaaaccgtccgccgcggccttttgccggtgatggagggg
caggtgatcgcagccgccgatgtacgccgtcccgatctgcgctggccgtttccacccgat
atggcgcagcgcctgacgggcaagcgcgtgctgtcgctgcggcggcggtcgaaatacatc
cttgccgatctggacagtgccgagacgctgctgatccatctgggcatgtcggggcggatg
ctgatttcgggcgtgatgatcggcgaatatgaacatgcgcgggcgctgccggaaaagcac
gaccatgtggtgctggacatggcagggggcgcgcggatcgcctttaacgacgcgcgtcgc
tttggggcgatggatctgatggcgacagacgccgtcgatcagaacccgctgattgcggtg
ctggggcccgagccctttggcaatgatttctcgcccgcctatttggcggcgcgacttgcg
gggcgcaaaacaccgatcaaatcggcgctgctggaccagcatatcgtggcgggccttggt
aatatctatgtctgcgaggtcctgtttcgcgcccgcatccaccccgcgcgccttgcgggg
gatttgaccgcgcttgaggccgatcgcctcgtccccctgatccgcgatgtgctggacgag
gcgattcgtgctggcggctcgagcttgcgcgattatcaaaagaccgacggcactttgggc
tatttccagcatgccttccaggtttatggccgcgaggggcaaccctgtagcacgccgggc
tgtatcggcacggtggcacgaatcgtccaagcgggccgttccagctttttctgcccgctc
tgtcaggccatccatcgctga
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