Lysobacter antibioticus 76: LA76x_1948
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Entry
LA76x_1948 CDS
T04154
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lab
Lysobacter antibioticus 76
Pathway
lab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA76x_1948 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lab03019
]
LA76x_1948 (rnr)
03016 Transfer RNA biogenesis [BR:
lab03016
]
LA76x_1948 (rnr)
Enzymes [BR:
lab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LA76x_1948 (rnr)
Messenger RNA biogenesis [BR:
lab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA76x_1948 (rnr)
Transfer RNA biogenesis [BR:
lab03016
]
Prokaryotic type
tRNA degradation factors
LA76x_1948 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
DUF1918
Motif
Other DBs
NCBI-ProteinID:
ALN80092
UniProt:
A0A0S2DUQ9
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All DBs
Position
2186395..2188833
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AA seq
812 aa
AA seq
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MTKKTKSNKTGPTGGKTPSRKTPGGAAQSAGPRSRKTAAPRPAWLPENLQHGPPKGPHAK
SASGPARTPAYHDPYADREASRYAQPIASRELILQTLVAADGPMRAEALAERLQLTEPDR
VDALGKRLGAMLRDGQLIQNRKGEFAPAAQMDLIPGVVIANPDGFGFLRPEAGGDDLFLP
PFEMRKAMHGDRVLVSVTGVDRRGRREGAIVEVLERRINRLIGRFTVESGISYVVPDDRR
IQRNVQIPPDARMDAQNGQLVVCELLQAPDPKRPPIGRVLAVLGDKLTASLAVQAAIHGH
EIPDVFPQETLDEAAAVPLTVEASVAAQRVDLRAMPLVTIDGEDAKDFDDAVYCESNRDG
FRLVVAIADVSHYVRPGTPLDDEAQKRATSVYFPGFVVPMLPETLSNGICSLNPKVDRLC
FVCDMQIGRDGEVTQSKFYEAVMNSHARLTYTQVWNAVGDVPEEAQSEAREQIGSLLPHI
ERLHQLFQVLLKARQKRGAIEFESSEVRFVLGKSGEVVQAGMLQRNDAHKLIEECMIAAN
VEAAKFLIAQQVPAPFRIHDRPPEQKYADLQEFLKEFALRMPAWKQVEPRDFTQLLKKIR
ERPDAALIESVLLRSQSLAVYAPENVGHFGLALTAYAHFTSPIRRYPDLLVHRAIKHALG
GAQPATFVYSPRQMTALALQCSERERRADEAEREVDERYRAAWMEQHVGGEFEGTISGVT
SFGLFIELDESKVNGLVHVTQLPHDYYHFDPIRKTLKGERTAREFRLGDRVSIVVLKASV
EDRKIDFRLVEERGAKPLPPRGQPAKRTKQKY
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaagacgaaaagcaacaagaccggtccgaccggtggcaaaaccccctcccgc
aagacccctggcggcgccgctcagagcgccggcccccgcagccgcaagaccgccgcgcct
cgcccggcctggctgcccgagaatctccagcacggcccgcccaaaggcccgcacgccaag
agcgcctccggtccggcccgtactccggcctaccacgatccctacgccgaccgcgaagcc
tcgcgctatgcgcagccgatcgccagtcgcgaactgatcctgcagaccctggtcgccgcc
gacgggccgatgcgcgccgaagcgctggccgaacgcctgcaactgaccgagcccgatcgc
gtcgatgcgctcggcaagcgcctgggcgcgatgctgcgcgacggccagttgatccagaac
cgcaagggcgagttcgccccggcggcgcagatggacctgattcccggcgtggtgatcgcc
aatcccgacggcttcggcttcctgcgtccggaggccggcggcgacgacctgttcctgccg
ccgttcgagatgcgcaaggccatgcacggcgaccgcgtgctggtcagcgtcaccggcgtc
gaccgtcgcggccgccgcgaaggcgcgatcgtcgaagtgctcgaacgccgcatcaatcgc
ctgatcggccgcttcacggtcgagtcgggcatcagctacgtcgtgcccgacgaccgccgc
atccagcgcaacgtgcagattccgccggacgcgcgcatggatgcgcagaacggccagctc
gtcgtgtgcgaactgctgcaggcgccggacccgaagcgcccgccgatcggccgcgtgctg
gcggtgctcggcgacaagctcaccgcctcgctggcggtgcaggcggcgatccacggccac
gagattcccgacgtgttcccgcaggaaaccctcgacgaagccgcggcggtgccgctgacc
gtcgaggcctccgtcgccgcacagcgcgtcgacctgcgcgcgatgccgctggtcaccatc
gacggcgaggacgccaaggacttcgacgacgcggtgtattgcgagagcaatcgcgacggc
ttccgtctcgtggtggccatcgccgacgtctcgcattacgtgcgtcccggcaccccgctc
gacgacgaagcgcagaagcgcgcgacctcggtgtatttccccggtttcgtcgtgccgatg
ctgcccgagaccctgtcgaacggcatctgctcgcttaatcccaaggtcgatcgtctgtgc
ttcgtctgcgacatgcagatcggccgcgacggcgaagtgacccagtcgaagttctacgaa
gcggtgatgaactcgcatgcgcgcctgacctatacccaggtctggaatgcggtcggcgac
gtccccgaggaagcacagagcgaagcgcgcgagcagattggctcgctgctgccgcatatc
gagcgtctgcaccagttgttccaggtgctgctgaaagcgcggcagaagcgcggcgcgatc
gagttcgaatccagcgaagtgcgtttcgtcctcggcaagagcggcgaagtggtgcaggcc
ggcatgcttcagcgcaacgacgcgcacaagctgatcgaggaatgcatgatcgcggccaat
gtcgaggcggcgaaattcctgatcgcgcagcaggtgccggcgccgttccgcatccacgac
cgtccgccggaacagaaatacgccgacctgcaggagtttctcaaggaattcgccctgcgc
atgccggcctggaagcaggtcgaaccgcgcgatttcacccagttgctgaagaagatccgc
gaacgccccgatgcggccttgatcgaatcggtgttgctgcgcagccagagcctggcggtg
tatgcgccggagaatgtcggccacttcggcctggcgttgacggcctatgcccacttcacc
tcgccgatccgccgttatccggacctgctggtgcatcgcgcgatcaagcacgcgctcggc
ggcgcgcagccggcgaccttcgtgtattcgccgcggcagatgaccgcgctggcgctgcaa
tgctccgaacgcgagcgccgtgccgacgaggccgaacgcgaggtcgacgagcgttaccgc
gccgcgtggatggaacagcacgtcggcggcgagttcgaaggcacgatcagcggcgtgacc
agcttcggcttgttcatcgaactcgacgaatccaaggtcaacggcctggttcacgtgacc
cagctgccgcacgactactaccacttcgacccgatccgcaaaaccctgaagggcgaacgt
accgcgcgcgagttccgcctcggcgaccgggtcagcatcgtcgtgctcaaggccagcgtc
gaagaccgcaagatcgacttccgcctggtcgaggagcgtggcgccaaaccgctgccgccg
cgcggacagccggcgaagcggaccaagcagaagtactga
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