Ligilactobacillus acidipiscis: LAC1533_0776
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Entry
LAC1533_0776 CDS
T05349
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
laca
Ligilactobacillus acidipiscis
Pathway
laca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
laca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LAC1533_0776
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laca03400
]
LAC1533_0776
Enzymes [BR:
laca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LAC1533_0776
DNA repair and recombination proteins [BR:
laca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LAC1533_0776
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
AAA_30
RecG_dom3_C
IstB_IS21
LYRM2-like
CdvA
Motif
Other DBs
NCBI-ProteinID:
SFV40196
UniProt:
A0A0R2K587
LinkDB
All DBs
Position
I:850075..853605
Genome browser
AA seq
1176 aa
AA seq
DB search
MKIMDLFGQIPEYHKWQEKLTSGHHLLTGLNGSAKTVMLAELFLEKRKTQVVVTDDLYHA
QQVADDLGSLLGDDSVFLFPVDEMMAEEISTSSPDFKSQRVLALNALIDPQPAIIVTSTA
GLTRFLPTPEVWKQSQFELKVGNDIDLEEIARLLTTMGYARQKMVERPGDFAIRGSILDI
YSLNEEYPLRCDLFDTEIDSLRLFDSTDQRSIKNIEHATVLPATDFIAFKDTLQKAGKKI
EKNYRKHLKELKDPEDKKQLADNFEQVVSDLQKANLSDTYHVFAAGILTEKTGLLDYLRP
EGLVIFDDYSRLLDKENDLEKQNAEWLTDRLKHQSVLPNTQLAVDVRTREQNDKHPQIFL
SLFQKGMGNLRFNQLLDIKARAVQQFFGQMPMLKTETDRWKKQEQTVVIFIPDNERIAKI
SQTLDDFEIPSIITKADSLQENTVQVVSGSLRAGFELPQANLVVLTENELFAKATKKQPK
RQTMKNTERLKSYTDLKKGDYVVHVNHGIGRFMGMKTMEVDGKHQDYLTIDYQNDAQLFI
PVTQLDRVQKYVSSEAKTPHINKLGGSEWTKTKKRVAGKIEDIADDLVDLYAKREAEKGF
AFSKDTSYQREFEDAFPYTETPDQLRSADEIKRDMEKEKPMDRLLIGDVGYGKTEVAMRA
AFKAIQDGKQVAFLAPTTVLAQQHYETLGERFTGFPVEIGLLSRFVTKKQSDLTIKDARE
GMCDILVGTHRLLSKDVKFADLGLLIVDEEQRFGVKHKEKLKQLKTNVDVLTLTATPIPR
TLNMSMLGVRDLSVIETAPMNRYPIQTYVMEQNYGVVVDAIRREMSRGGQVFYLHNRVMD
IEKVADELQALVPDARIAYIHGQMSENQMERILYNFINGEYDVLVTTTIIETGVDIPNAN
TLFVENADRMGLAQLYQLRGRVGRSSRVAYSYFMYQQDKILNEVSEKRLEAIKDFTELGS
GFKIAMRDLSIRGAGNILGKQQHGFIDSVGYDLYTQMLSESVARKRGKKVQEKTDTEINL
DVEAYLPGTYIEDPRQKIEIYKRVRQLQSKDEYLEVQDDLIDRFGEYPVEVAILLDIGLL
KMYADQAMVDSIKQNGKKIVIELNAAATQKFAAKQLLKAVAETKFSATLEPGEKQMKIAL
VIQPKMNMSDVVVQLQKLTQSLAEELNVPAQKAVEK
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcatggatctttttggacagatccccgaatatcacaaatggcaagaaaaatta
actagtggtcatcatttattgacgggacttaatggttcggcaaaaacagtaatgttggct
gaactttttctggaaaaaaggaaaacacaagtggtcgttacggatgatctatatcatgca
caacaggttgctgatgatctaggcagtttgttaggtgatgactctgtctttttgttcccg
gtggatgaaatgatggccgaagagatctcaacgagttcaccagattttaaaagccaaaga
gtgttagctttaaacgctttgatcgacccccaaccggcaatcattgtgacctcgactgct
ggattaactcgttttttacctacgccggaagtgtggaagcaaagccaatttgaacttaaa
gtcggcaatgacattgatttggaagaaattgcccgtcttttaacaacgatgggttatgca
cggcaaaagatggttgaacggcctggagattttgcgataagaggctcgatcttagatatt
tatagtttgaatgaagaatatccattgcgttgcgatttatttgatacagaaatagattct
ttgcggctgtttgattcaactgatcaaagaagtatcaagaatattgagcacgctacagtt
ttgcccgcgactgattttattgcttttaaggatacacttcaaaaagctggcaaaaaaatt
gaaaaaaactatcgtaagcatttaaaagagctcaaagatcctgaagataaaaaacagtta
gcagataactttgagcaggttgtaagcgacctccaaaaagctaatttaagcgatacttat
catgttttcgctgctggtatcttgacagaaaaaaccggtttgctagattatttaaggcca
gagggtttggtcatatttgatgactattctcggctgttggacaaagaaaatgatttggaa
aaacaaaatgctgaatggctaacggataggttaaaacatcaaagtgttttgccaaacact
cagctggcagtggatgttagaactagagaacaaaatgacaagcatccacagatatttctc
tccctttttcaaaaagggatgggtaatcttcgttttaatcaattgctggatattaaagca
cgtgctgttcagcaattttttggacaaatgccgatgttgaagactgaaacagatcggtgg
aagaaacaagagcaaacggttgttatttttattccagataacgaaaggatcgccaaaatt
tcacagactttagatgattttgagatcccaagcattattactaaagctgacagtttgcaa
gaaaacacggtccaggtcgtgtctggttcgttacgagccggttttgaactgccccaagcc
aatttggttgttctgactgaaaatgaattatttgctaaggcgactaaaaagcagcctaag
cgccaaaccatgaaaaacacggaacgtttaaagagctatactgatttgaaaaagggcgac
tatgttgttcatgtaaatcacggtattggacgttttatgggcatgaaaactatggaggtc
gatggtaaacaccaagattacttgactatcgactatcaaaatgatgcacagttattcatt
ccagtcactcagcttgatcgagtgcaaaaatatgtttcttcagaggcaaaaacgccgcat
atcaataaattaggcggtagtgaatggactaaaactaagaagcgtgtagctggcaagata
gaggatattgcggatgacttagtggatctttacgctaaaagagaggctgaaaagggcttt
gctttttcaaaagatactagctatcaaagagaatttgaagatgcgtttccttacacggaa
actcctgatcagctgcggagtgctgacgagatcaaacgagacatggaaaaagagaaacca
atggaccgactattgatcggtgacgttggttatggaaaaactgaagttgcaatgcgggca
gcctttaaggcgatccaagatggaaagcaggttgcttttcttgcgccaaccactgtttta
gcacagcaacattatgagacattaggtgaacgttttacaggtttccctgtagaaatcggt
ctactatcacggtttgtaacaaaaaaacaatctgatctgaccataaaagatgcaagagaa
gggatgtgtgatatcctcgtggggacacatcgcttgttatcgaaagatgtgaagttcgcc
gatcttggcttactgatcgtggatgaggaacagcgttttggggtcaaacacaaagaaaaa
ctgaaacagttaaaaacaaatgttgatgttttgactttgactgcgacaccgatcccacgg
acacttaacatgtcaatgcttggtgttagagacctttcagtgatcgaaacagcaccgatg
aaccgctatccgattcaaacctacgtgatggaacaaaattatggtgtagtagttgatgca
atcagacgagaaatgtcacgtggcggtcaagtcttttatttgcataatcgagtcatggat
atcgaaaaagtagccgatgaactacaggctttggttcctgatgctagaattgcatatatt
catgggcaaatgagcgaaaatcagatggagcgtatcctctacaattttattaacggagaa
tatgatgttttggttactacgaccatcattgaaacaggtgtagatattcctaatgctaat
actttgtttgttgagaatgccgatcggatgggcttagcccaattgtatcagttgcgtgga
cgagtcgggcgctccagtcgggttgcttattcttactttatgtatcaacaagacaagata
ttaaacgaagttagtgaaaaaagactcgaagcgatcaaagattttacggaattgggttct
ggtttcaagatcgctatgcgagatctgtcgatcagaggcgcgggaaatattttaggcaag
cagcagcatggctttatcgattcggtgggttatgatctgtatacgcaaatgttaagcgaa
tcagttgctagaaaacgtggtaagaaagtccaagaaaaaactgacactgagatcaatttg
gatgtggaagcgtatctgccaggaacatatatagaagatcctcggcagaagatcgaaatt
tacaaacgtgtacggcaactgcaatctaaagatgagtatcttgaagttcaagatgacctg
atcgaccgttttggcgagtatcctgtagaagtcgcaatattattagatattggtttgttg
aaaatgtatgctgatcaagcgatggtcgactccattaagcagaacggtaaaaaaattgtc
attgagttaaacgccgcagctacgcaaaaatttgctgctaaacagttgttgaaggctgtt
gctgaaacaaaattcagtgcaaccttggagcccggtgaaaagcagatgaagatcgcttta
gtaattcaacctaagatgaatatgagtgatgtggttgttcaattacagaaactaactcaa
agcttagcggaagaattgaatgttcccgctcagaaagcagttgaaaaatag
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integrated database retrieval system
