Lysinibacillus agricola: FJQ98_16255
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Entry
FJQ98_16255 CDS
T07480
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lagr
Lysinibacillus agricola
Pathway
lagr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lagr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FJQ98_16255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lagr03400
]
FJQ98_16255
Enzymes [BR:
lagr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FJQ98_16255
DNA repair and recombination proteins [BR:
lagr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FJQ98_16255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QQP14998
LinkDB
All DBs
Position
complement(3299321..3300199)
Genome browser
AA seq
292 aa
AA seq
DB search
MLLHMGNNNEIIDNPEWIYDIKWDGWRILLHKQGERVEAYTRHGNNVTSKFPELQTVGKS
IKEDTAIIDCEGVVLRNGVSVFEDFAYRGRLSNKDKIDQATLTNAATFIAFDVLATGKSH
MNKTLIERKEILSSIIEPSNSLLVTPSVTGNGNDIFQLTKDRGMEGIVGKRSNSTYKTNH
RSHDWLKYKHFKVMDTVILGYKENPFTMIVGTQLSNGKYRPLANVEFGFKPEEKTAFREI
AKQIITNVERDIMWIEPSLFCKVQYLEKTSTGSLRIVSFKGFNFNKAHEESI
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgttacttcacatgggtaacaataatgaaataatagataatccagagtggatttacgat
ataaaatgggatggttggcgcatccttttgcataaacaaggtgagcgagtagaggcatat
acacgacatggcaacaatgtaacttctaagtttccagagctacaaactgttggaaagtca
attaaggaagacacagcaattattgattgtgaaggcgtagtactgagaaatggtgtatca
gtatttgaagattttgcttacagaggtagactttcaaataaagataagattgatcaagca
actttaactaatgcggctacttttatagcatttgatgtattagctactggtaagtcacat
atgaataaaacacttatagaacgtaaggaaatattatcatcaataatcgaaccttcaaat
agtttacttgttactccatcggtcacaggcaatggcaacgatatatttcagttaactaag
gatagaggtatggaaggtatcgtaggaaagcgaagtaattcgacttacaaaactaaccat
cgatcacatgattggttgaagtataaacactttaaagtaatggatactgttatcttagga
tataaagagaatccttttacaatgatagtgggtactcaattaagtaacggtaaatataga
cctcttgcgaatgtagagtttggctttaaacctgaagagaaaacagctttcagggaaatt
gctaaacagataataacaaatgtagaacgtgatataatgtggatagaaccaagcttattc
tgtaaagtacagtatcttgagaaaacgagtactggttcattgagaatcgtttcgtttaaa
ggatttaattttaataaagctcatgaagaaagtatctaa
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