Lupinus angustifolius (narrow-leaved blue lupine): 109331392
Help
Entry
109331392 CDS
T04664
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
Helicase_RecD
UvrD-helicase
ATPase
SRP54
AAA_16
PhoH
AAA_22
Ribosomal_S13_N
AAA_25
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
109331392
NCBI-ProteinID:
XP_019421384
LinkDB
All DBs
Position
LG17:2857486..2874803
Genome browser
AA seq
1266 aa
AA seq
DB search
MDSQQSNLFDTVSQPDPGNDAYAFLEFNTQGEDFDYPEFCDPIRSPVSWPTPSDSLAEPS
ERGGGGGGAGSDHQSDASPVSAAPGSAAKGRSGSSSGGGNSQMVDALLPGMSGLNFEDTG
DDDNFEYGKGDFTEHACKYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK
HKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNW
DLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPG
VDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNITIRWDIGLNKKRVAY
FVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDV
NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGA
PGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNV
AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQMLKDE
QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATE
PECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVILGVKPIRLQVQYR
MHPCLSEFPSNSFYEGTLQNGVTVNERQTTGIDFPWPVPNRPMFFYVQMGQEEISASGTS
YLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEV
ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP
LWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGVAASDNFGSGA
GATSDRRSGRGRGSYMPHGPPNGTHKPGVHPAGYTLPRVPLHPFHGGPQSQPYAIPSRGA
VHGPVGAVPHVPSPGSRGFGAGRGNTGAPIGNHLPHQQGTPQSVGNIGPTFNFPTLENPN
SQSSVGGPLSQPGFANNMSVQGASQSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVADFS
TQASQSVYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSPGLFTQA
GFTDPLQDDASQSHFSAANPNALQSQMNPLYSQPFAHYNTQPLNLQASQQQSQGQSSQNQ
KIHYKS
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggattcacaacagagcaatcttttcgacaccgtttcgcaacccgacccaggaaacgac
gcttacgctttcctcgaattcaacacccagggcgaggatttcgattatccggagttctgc
gacccgattaggtcaccggtgtcatggcctacgccctccgattcgcttgctgaaccctcg
gagcgcggcggtggaggtggcggagctgggtccgatcaccagtctgatgcctcgccggtt
tcagctgctccagggagtgcggcgaaagggcggtccggaagcagcagcgggggaggaaat
agccagatggtggatgcgctgctgcctgggatgagcgggttgaattttgaggacactggt
gatgacgataatttcgagtatggcaagggtgattttactgaacatgcttgcaaatattgt
ggcgtctccaatccagcgtgtgttgtgaggtgcaacgtgccttcgtgtcgcaagtggttc
tgtaattctcgtgggaacacttctggatcacatatagtaaatcacctggttcgggcaaaa
cacaaggaagtctgtctacacaaagatagtccgttgggagaaacaattcttgaatgctac
aactgtgggtgtcgtaatgtgtttctccttggatttatttctgccaagactgaaagtgta
gttgttcttctttgtcgtgaaccttgcttgagtgtcaatgcattgaaggacatgaattgg
gaccttagccaatggtgtcccttgattgatgataggtgtttcttgcagtggcttgtaaag
gtcccatctgaacaagagcagttgagggcacgccaaataagtgctcagcaaataaataag
gtggaagagttgtggaagacaaatcctgatgcttcttttgaggaccttgagaagcctggt
gtagatgatgaacctcaatccgtggctttgaaatacgaagatgcatatcagtatcaaaat
gtatttgcacctcttattaagcttgaagccgattatgataagatgatgaaagaatcacaa
agcaaggacaatatcacaattcgatgggatattggtcttaataagaagcgtgttgcgtac
tttgtttttccaaaggaagataatgagttgcggcttgtacctggtgatgaattacgattg
cgctattcgggtgatgctgcacatcctgcatggcagtcagtgggtcatgtgattaagcta
actgcacaagaagaagttgcactggagctccgtgctagtcagggggtgccagttgatgta
aaccatggtttcagtgttgattttgtctggaaaagtacaagctttgataggatgcagggt
gctatgaaaacctttgctgtagatgagacgagtgtaagcgggtatatttatcatcattta
ttgggtcatgaagttgaggttcagatggtgcgtaacgcattgcctcgccgctttggtgca
cctgggcttccagaactcaatgcatctcaagtttttgctgtgaaaagtgttctccagagg
cctattagtttgattcaaggtccacctggaactggtaagactgtaacttctgcagcactt
gtgtatcacatggccaagcaaggtcaaggacaggttttggtttgtgcacctagtaatgtg
gctgtggaccaactggctgaaaagataagtgctactggattgaaggttgtgaggctctgt
gcaaagtcaagggaagctgtgagttctcctgttgagcatttaacccttcactatcaggtt
cgacatcttgatacatctgacaagagtgaacttcacaagttacaaatgcttaaagatgaa
caaggagaactttctagcagtgatgaaaaaaaatataaagcacttaagcgagcaactgag
agggagatttctcaaagtgctgatgtgatatgctgtacttgtgttggtgctggagatcct
cggctatcaaactttaggttccgtcaggtacttatcgatgagtccactcaagcaacagag
cctgaatgtctcattcctttggttcttggagtgaagcaggttgttcttgtgggtgatcat
tgtcagcttgggccagtcattatgtgcaagaaagcagctcgggctgggctagctcagtca
ctttttgaacgccttgttatacttggcgtcaagccaattaggttgcaggtccagtaccgt
atgcatccatgcctttcagaatttccctctaacagcttttatgaaggcaccctgcaaaat
ggagtcactgttaatgaaaggcagacaacaggaattgattttccatggcctgtgccgaac
cgtcccatgttcttttatgttcagatgggacaagaagagataagtgcaagtggaacatct
tatttaaataggactgaggctgcaaatgttgaaaagattgttaccactttcttaaaaagt
ggtgtggtcccaagtcagatcggtgttataacaccgtatgaggggcaaagagcttatatt
gtgaactatatgtcaagaaatggatctctcagacaacaactttacaaggagattgaggtt
gctagtgttgactcctttcaaggaagggagaaagactacatcattctttcatgtgttaga
agtaatgaacatcagggcattggatttctgaatgatccgagaagacttaatgttgctttg
actcgagcaagatatggtattgtaattctgggaaaccctaaagttctaagcaagcagccc
ctttggaatggcttattaacacactacaaggagcatgaatgcttagtagaagggcctttg
aacaatttgaagcaaagtatggttcagttccagaaacccaagaagatttacaatgaaaga
aggcttttctatgggggtggacctggagttgcagctagtgacaattttggttctggtgct
ggtgcaacttcagatcgaaggtccggccgaggaagaggatcttatatgcctcatggacca
ccaaatggaacccataagcctggtgtgcatcctgccgggtatactctgcctagagtcccc
ttgcatccttttcatggtggcccccaatctcaaccatatgcaattccatctcgtggagct
gtacatggacctgttggggcggttcctcatgtaccatctccagggagtcggggttttggg
gctgggagaggtaatactggtgctccaattggcaatcatcttccgcaccagcaaggtaca
ccgcaatctgttgggaatattggacccacttttaacttccctactctggagaatcctaac
agccagtcctctgttggtggtccattatctcaacctgggtttgctaataatatgtcagtc
caaggggcgagccagtcatttcgtgatcagttttcagtacctggaatgtctcaggacttc
ttgggcgatgacttcaaaagccagggatctcatgttccttataacgttgctgatttctcg
acacaggcttctcaatctgtatatgctgttgattatgctacacaaggagcacaaggtgga
ttcccggggaacttcctgaaccagaattctcaagctgggtattcacgttttggttctgga
aatgacttcatgtctcaggactacatggcccatggatcaccaggtctttttactcaggct
ggattcactgatcccttgcaagatgacgcatcacaaagccatttcagtgcagccaatccc
aatgctcttcagtcccagatgaatcctctctattcacagccttttgctcactacaacaca
cagccgttgaacttacaggcttctcagcagcagtctcagggtcagagctcccaaaatcag
aaaattcactataaaagttaa
DBGET
integrated database retrieval system
