Lupinus angustifolius (narrow-leaved blue lupine): 109359964
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Entry
109359964 CDS
T04664
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
lang
Lupinus angustifolius (narrow-leaved blue lupine)
Pathway
lang03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lang00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109359964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lang03041
]
109359964
Enzymes [BR:
lang01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109359964
Spliceosome [BR:
lang03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
109359964
Complex C
U4/U6.U5 tri-SnRNP related factors
109359964
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
PWI
AAA_19
nSTAND3
T2SSE
AAA_30
SRP54
Flavi_DEAD
AAA_16
AAA_7
ABC_tran
Motif
Other DBs
NCBI-GeneID:
109359964
NCBI-ProteinID:
XP_019460212
UniProt:
A0A1J7HYM9
LinkDB
All DBs
Position
LG01:30622763..30626463
Genome browser
AA seq
1047 aa
AA seq
DB search
MDENMKTWVSDKLMSILGYSQPTVVQYMIGLSKQATSPSDLVSKLQEFGFSSSSETNAFA
SEIFSKVSRKSSGLSQYQKQEREAALLAKKQKTYKLLDDDDDDDDVRGVEEGKVSETKSA
SRKGDSNKRQFRKKIEVDDVVDVEEEGILTRERVVRRRTSRDDDDDSESEEERLKDQREK
EELEKHLRERDEAGTRKLTEHKLTQKEKEEAIRRSNALEKDDSLAFRKVSRQEYLKKREE
KKLDELRGDIEDEQYLFEGVKLTEAEKRDLQYKKEIYELVKKRTEDADNANEYRMPDAYD
QDGGVNQEKRFSVAMQRYRDTTAEEKMNPFAEQEAWEEHQIGKARLKYGSKNKKQTSDDY
QFVFEDQIDFIKASVMDGDNVDYEEMEDSLEKSKAKSALEALLEERKKLPIYPYRDELLK
AVDEHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGMIACTQPRRVAAMSVAARVSQEMGV
KLGHEVGYSIRFEDCTSEKTIVKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDI
LFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADY
LDAAIVTSLQIHVTQPPGDILVFLTGQEEIETAEEILKHRTRGLGTKIAELMICPIYANL
PTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLI
TPISKASAMQRAGRSGRTGPGKCFRLYTAYNFHNDLDDNTVPEIQRTNLANVVLMLKSLG
IHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVAS
EKYTCSEDIISIAAMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKE
TNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNSSDVDGIKKSITSGFFPH
SARLQKNGSYRTVKHPQTVHIHPSSGLAQVLPRWVVYHELVLTTKEYMRQITELKPDWLV
EIAPHYYQLKDVEDSVSKKMPRGEGRA
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atggacgagaacatgaaaacatgggtttccgacaaactcatgtctatactcggttattct
caacccacagttgttcaatacatgattggactctccaaacaagccacgtcaccttccgat
ttggtttcaaaattacaagagtttggattttcatcttcctctgaaactaacgctttcgct
tcagaaattttctccaaggtttctcgtaaatcctctggtttgagtcagtatcagaaacaa
gagagagaagctgcattgttagcgaagaaacagaagacttataaattattagatgatgat
gatgacgacgatgatgttcgcggtgttgaagaaggtaaagtttcggaaacaaaatctgca
tctaggaagggagatagtaataagagacagtttaggaagaaaattgaagttgatgatgtt
gttgatgttgaggaggaggggattttgacacgggagagggtagttaggagacgaacttcg
cgcgatgatgatgatgattcggagtcagaggaagaaaggttgaaagatcagagagagaag
gaggagttagagaaacatcttagagaaagagatgaggctgggacacggaagttgactgag
cataaattaactcagaaggagaaagaagaggcgattcggagatctaatgctttggagaag
gatgattcactagcttttaggaaggtttcgaggcaggagtatttgaagaagagggaagag
aagaaattggatgagttgagaggtgatatagaggatgagcagtatttgtttgagggggtg
aagcttacggaagcagaaaaacgtgatcttcagtataagaaagagatttatgaacttgtg
aagaagcggacggaggatgctgacaatgcgaatgagtataggatgcctgatgcttatgat
caggatggcggtgttaatcaggagaagaggttttctgtggctatgcagcgttacagagat
acaactgccgaggaaaagatgaatccatttgctgaacaggaggcatgggaggagcatcaa
atcgggaaggcaaggctgaagtatggttccaaaaataaaaaacaaacatctgatgattat
cagtttgtttttgaggaccagattgattttatcaaggcatcggttatggatggagataat
gttgactatgaagaaatggaagattcacttgaaaagtcgaaagcaaagtcagctttagag
gcacttctggaggagaggaaaaagttgccaatttacccttatcgcgatgaattgctcaaa
gcagttgatgagcatcaggtgcttgtgattgttggtgaaactggttcgggaaagactaca
cagattccccagtatctgcatgaagctggctacacaaagcgtggaatgattgcatgtact
cagccgcggcgtgttgctgctatgagtgttgctgctcgagtttctcaagaaatgggtgtt
aaactaggacatgaggttggttactccatccgttttgaggattgcacatcagagaagact
attgtgaaatatatgacagatggaatgttattaagggaattccttggcgagccagatctt
gcaagttacagtgttgtaatggtggatgaggctcatgaaagaacactctcaactgatatt
ttgtttggtttagtgaaggatatttctcgtttccggcctgatcttaagttgctgatatct
agtgctacacttgatgcagagaagttcagtgattattttgattctgctccaatattcaaa
attccggggaggcggtatcctgttgaaataaactttacgaaagcaccagaagcagactac
ttagatgcagccattgtcacatcactccaaatccatgtcactcaacctcctggagatata
ttggtcttccttactggtcaagaagaaattgaaacagccgaagaaatattgaagcatcgg
actagaggcttggggactaaaattgctgagttaatgatatgtcctatatatgctaacttg
ccaactgaactccaagctaaaatatttgaacccactcctgaaggggcaagaaaggttgtc
cttgccactaatattgcagaaacgtcattgactattgatgggattaagtatgtcattgat
ccaggattctgtaagatgaaaagttataatccaagaacaggaatggagtcgttgttaata
actcccatctcaaaagcttcagcaatgcaaagagctggtcgttccggaaggacaggtcca
ggtaaatgcttcagattgtatactgcatacaattttcacaatgatttagatgataacact
gttccagaaatacagcggaccaaccttgctaatgtagttttgatgttaaaaagtctcggt
attcatgacttgctgcattttgattttatggatcctccacctgctgaagctttattgaaa
gcattagagcttctatttgcattaagtgcgttaaacaagcttggtgagttaactaaggtt
ggtcgacggatggcagagttcccattggatcccatgttgtcaaaaatgatagtggcttct
gagaagtacacgtgttcagaagacatcatttccattgctgctatgctttctgttggcaac
tcaattttttaccgcccaaaggataaacaagtacatgctgacaatgcaaggttgaatttt
cacactggaaatgttggagatcatattgcattgctgaaggtctacaattcatggaaggag
accaactattcaacacaatggtgctatgaaaattatatacaggtaaggagtatgaaacgg
gctagggatatccgtgatcaacttgcaggtcttttagaaagggttgaaatcgagcttact
tcaaattccagcgatgtagatggcattaagaagtccataacatctggattttttccacac
tctgcacgattgcagaaaaatggatcttatcggactgttaaacatccacaaacagttcac
atacaccctagttcaggattggcacaggttcttccaagatgggttgtataccatgaacta
gtgcttaccaccaaggaatatatgaggcaaatcacagagttgaagcctgattggttggtg
gagatagctccccactattatcagcttaaggatgttgaagattcggtttcaaagaagatg
cctcgtggagaaggacgagcatag
DBGET
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