Lactobacillus apis: DKL56_06295
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Entry
DKL56_06295 CDS
T06844
Name
(GenBank) ATP-dependent helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lapi
Lactobacillus apis
Pathway
lapi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lapi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DKL56_06295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lapi03019
]
DKL56_06295
03009 Ribosome biogenesis [BR:
lapi03009
]
DKL56_06295
Enzymes [BR:
lapi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DKL56_06295
Messenger RNA biogenesis [BR:
lapi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DKL56_06295
Ribosome biogenesis [BR:
lapi03009
]
Prokaryotic type
rRNA helicases
DKL56_06295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Phage_connect_1
Motif
Other DBs
NCBI-ProteinID:
AWM74130
LinkDB
All DBs
Position
complement(1316360..1317892)
Genome browser
AA seq
510 aa
AA seq
DB search
MKFSELGLNDELLKAIKRSGFEEATPIQEQTIPLALAGKDVIGQAQTGTGKTAAFALPIL
QNLDKHNKTIQALIIEPTRELAIQTQEELFRLGRDEKARVQVVYGGADIGRQIRSLKNHV
PAILVGTPGRLLDHLKRKTINLEGVNTIVLDEADEMLDMGFIQDIESILSYVKNRSQTLL
FSATMPKPILRISEKFMHDPEIVRIKTKELTADLIDQYYVRCKDAEKFNIMCRLIDVESP
DLAVIFVRTKRRVDEVTRGLQARGYNAAGIHGDLSQARRISVLKRFRAGKLDILVATDVA
ARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGSSITFVTPNELGYMRTIEQLTK
KKMTPLRPPSDDQALRGQLKIAKTKIEDLMKEDLSKYTDDASELLENYSAIDLVSAFLKN
LSKDSSDVEVTISSEKPLPYKGGNGGGRRNGGGRGRGHYGRGGGRGGNSRGGHGNYRGGD
RNHGGHSSYRGGRSNRSGSGHDFVIKNKKD
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
gtgaaattttcagaattaggattaaatgacgagcttttaaaagcaattaaacgttcaggc
tttgaagaagcaacgccaatccaggaacagacaattcctcttgccttagcgggtaaagac
gtaattggtcaagcgcaaacaggtacaggtaaaactgcagcatttgctttgccaatttta
caaaatttagataaacacaataaaactattcaagcgttgattatcgaaccaacacgtgaa
ttagctattcaaacccaggaggagcttttccgcttgggtcgtgatgaaaaagcacgtgtt
caagtagtttatggtggtgcagacattggccgccaaattcgctcacttaagaaccatgta
ccagcaattttggttggtacgccagggcgtttgcttgaccacttaaagcgtaagacaatc
aacttggaaggtgtcaacacaattgtacttgatgaagctgatgaaatgctagacatgggc
ttcattcaagatattgagagcattttgagttatgtgaagaatcgcagccaaactttgctt
ttcagtgccacaatgccaaaaccaattttgcgcattagtgaaaagttcatgcatgatcca
gagattgtacggattaagacaaaagaattaactgctgatttaattgatcagtactacgtt
cgttgtaaggacgcagaaaaattcaacatcatgtgtcggttaattgacgttgaaagccca
gatttggcggttatctttgttcgaactaagagaagggttgacgaagttactcgcggtttg
caagcacgtggctataatgctgccggcattcacggtgacttgtcacaagcacgtcgaatc
agtgtcttgaagcgattccgtgcaggaaaattagatattttagttgctaccgatgttgca
gcacgtgggcttgatatctcaggtgttactcacgtttacaactatgatatccctcaagat
ccagattcatatgttcaccgtattggtcgtacaggtcgtgctggtcaaaatggtagttca
attacttttgttactccaaacgaacttggctacatgcgcacaattgagcaattaactaag
aaaaagatgactccacttcgtccaccttcagatgatcaagctcttcgtggtcaattaaag
attgctaagactaagattgaagacttgatgaaggaagatttgagtaagtacactgatgac
gctagtgagttacttgaaaactactcagccatcgacctagtttccgcatttttgaagaac
ctttcaaaagattcttctgatgttgaagtaactattagttccgaaaaaccattgccatat
aaaggtggtaacggtggtggtcgccgcaatggtggcggcagaggccgtggacattatggt
cgtggcggcggtcgcggtggtaatagccgtggcggtcacggtaattatcgcggtggggat
cgtaatcacggtggtcatagcagttaccgcggtggccgttcaaaccgctcaggtagtggt
catgattttgtaattaaaaacaaaaaagattaa
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