Lysobacter antibioticus ATCC 29479: GLA29479_3494
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Entry
GLA29479_3494 CDS
T04526
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GLA29479_3494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
laq03400
]
GLA29479_3494
Enzymes [BR:
laq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GLA29479_3494
DNA repair and recombination proteins [BR:
laq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GLA29479_3494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALN64347
LinkDB
All DBs
Position
3810027..3810887
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AA seq
286 aa
AA seq
DB search
MSDTRLSHPERIVYPVAKISKGEVADYYRAVEAWLLPELVERPLSLLRCPDGIASACFFQ
KHHADSLGEGVHPVRLRESAGQADYVYVRDIEGVSALVQMNTLEFHPWGAKRQAPDRPDR
LVFDLDPAEDIAWSELKRAGREVRDRLAEIGLDSWPRLSGGKGMHVVVPIRPGPGWAEAK
AFSEAFADAMVAQSPLRYVATASKVARKGRIFIDWLRNARGATSVASWSLRAREGAPVAM
PLRWDEFSRARSSTDFDLAKALRRAARLRSDPWEGFAESRQRLPTI
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatacccggctcagccatcccgaacgcatcgtctatcccgtcgcgaagatcagc
aaaggcgaggtcgccgattattaccgcgcggtcgaggcctggctgctgccggaactggtc
gaacgtccgctgtccttgctgcgctgcccggacggcatcgcatcggcgtgtttcttccag
aaacaccatgccgacagcctgggcgagggcgtgcacccggtccgcctgcgcgagtccgcc
ggccaggccgactacgtctacgtgcgcgacatcgaaggcgtgtcggcgctggtgcagatg
aacaccctggagttccatccctggggcgcgaaacggcaggcgccggaccggccggatcgg
ttggtgttcgacctggacccggccgaggacatcgcctggagcgaactcaagcgggccggg
cgcgaagtgcgcgaccggctcgccgaaatcgggctcgacagctggccgcgcctgtccggc
ggcaagggcatgcacgtggtggtgccgatccggccaggcccgggctgggccgaggccaag
gccttcagcgaggccttcgccgacgccatggtcgcgcaatcgccgctgcgctatgtcgcg
acggcatccaaggtcgcccgcaaggggcgcatcttcatcgactggctgcgcaatgcgcgc
ggcgccaccagcgtggcgagttggtcgctgcgcgcgcgcgaaggcgcgccggtggcgatg
ccgttgcgctgggacgagttctcgcgtgcgcgttcttcgaccgacttcgatctggccaag
gcattacgtcgcgccgcgcgcctgcgcagcgatccctgggaaggtttcgccgagagccga
caacgcttgccgacgatatga
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