Lysobacter antibioticus ATCC 29479: GLA29479_709
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Entry
GLA29479_709 CDS
T04526
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
laq
Lysobacter antibioticus ATCC 29479
Pathway
laq02020
Two-component system
laq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
laq00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GLA29479_709 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GLA29479_709 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
laq03021
]
GLA29479_709 (rpoN)
Transcription machinery [BR:
laq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GLA29479_709 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_Crp_2
HTH_AsnC-type
HTH_38
HTH_Tnp_ISL3
Sigma70_r4
HTH_23
DUF6471
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
ALN61594
LinkDB
All DBs
Position
747199..748608
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AA seq
469 aa
AA seq
DB search
MKPRLQASLGQQLVMTPQLRQAIRLLQLSAVELEAELATAIESNPLLDWTDPSAVNEDEP
RPPPSTEEGAEAPTAEPEWTMDDGETWYERVGPSDNSDEDSPAAEQVAEAETLHDHLLWQ
LHLSPLSQRDRSIGVALIEAIDDDGYLRESLAAIVESLAMGASEEEVATVLHQVQRFDPV
GSGARSLSECLSLQLNTLSDDTPGKALALVIAGEPLERLPRIGAAGLASELKRDIAEVET
AVQLLRSLDPRPGAQMGAISTDTYVTPDVVIWRQNGLWRVALSEAMRPRISIHRGYESMI
RHANASDASYLRGHLQEARWLLKSLEARGDTLLKVARCLLKQQAGFLEFGDSALRPLTLR
EVATEVGLHESTVSRAIARKYARTPRGTMPLRAFFASGIDTGSGGEASSTAIQAMIRRLI
EAENPRKPLSDARLAETLKATGVPVARRTVAKYREAMSIPSSQERVRMG
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaagccccgcctccaagcctcgctcggacaacagctggtgatgacgccgcaattgcgg
caggcgattcgcctgctgcagctgtcggccgtcgaactggaagccgaactggccaccgcg
atcgagagcaatccgctgctcgactggaccgatccgtccgcggtcaacgaagacgagccg
cgtccgccgccgagcaccgaggaaggcgccgaggcgccgaccgccgagcccgaatggacc
atggacgacggcgagacctggtacgaacgggtcggcccctccgacaacagcgatgaagac
tcgcccgcggccgaacaggtcgccgaggccgagaccctgcacgaccatctgctgtggcag
ttgcacctcagcccgctgtcgcagcgcgaccgcagcatcggcgtggccctgatcgaggcg
atcgacgacgacggctatctgcgcgaaagcctcgcggcgatcgtcgaatcgctggcgatg
ggcgccagcgaggaagaagtcgcgaccgtgctgcaccaggtgcagcgcttcgacccggtc
ggctccggcgcgcgctcgctcagcgagtgcctgagcctgcagctcaacaccttgtccgac
gacacccccggcaaggccctggccctggtgatcgccggcgaaccgctggaacgtctgccg
cggatcggcgcggccggcctggccagcgaactcaagcgcgacatcgccgaggtcgaaacc
gcggtgcagttgctgcgctcgctcgatccgcgccccggcgcacagatgggcgcgatctcc
accgatacctacgtcacccccgacgtggtgatctggcgccagaacggcctgtggcgcgtg
gcgctgtcggaagcgatgcgcccgcgcatctcgatccatcgcggctacgaaagcatgatc
cgccacgccaacgcctccgatgccagctatctgcggggccatctgcaagaagcgcgctgg
ctgctcaagagcctggaagcgcgcggcgacaccctgctcaaggtggcgcgctgcctgctc
aagcaacaggccggcttcctcgaattcggcgacagcgcgctgcgcccgctgaccctgcgc
gaggtcgccaccgaagtcggcctgcacgaatccacggtctcgcgcgcgatcgcccgcaag
tacgcgcgcaccccgcgcgggaccatgccgctgcgcgctttcttcgcctccggcatcgac
accggctccggcggcgaggcctccagcaccgcgatccaggccatgatccggcgcctgatc
gaagccgagaacccgcgcaaacccttgtccgatgcgcgcctggccgaaaccctcaaggcc
accggcgtgccggtcgcacgccgcaccgtggctaagtaccgcgaggccatgagcatcccc
tcgtcgcaagaacgcgtgcgcatgggctga
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