Lysobacter auxotrophicus: LA521A_12020
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Entry
LA521A_12020 CDS
T09075
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
laux
Lysobacter auxotrophicus
Pathway
laux03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
laux00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LA521A_12020 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
laux03019
]
LA521A_12020 (rnr)
03016 Transfer RNA biogenesis [BR:
laux03016
]
LA521A_12020 (rnr)
Enzymes [BR:
laux01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LA521A_12020 (rnr)
Messenger RNA biogenesis [BR:
laux03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LA521A_12020 (rnr)
Transfer RNA biogenesis [BR:
laux03016
]
Prokaryotic type
tRNA degradation factors
LA521A_12020 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_11
HTH_12
HTH_AsnC-type
DprA_WH
RNase_II_C_S1
HTH_24
HTH_20
HTH_51
HTH_IclR
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
BDU16001
LinkDB
All DBs
Position
1345406..1347913
Genome browser
AA seq
835 aa
AA seq
DB search
MKKKASGASKSGSKSGFSKAGSSKAGSSKAGPRGGKGGGKPGAGKATSGTTGKFASGSGG
RKAPPARPGWMPEPPPPAHRGRGGAASGFHDPYAAREAARYEQPIASREMILQLLVQADG
PLSADELAQRLGLTEESRFDALGKRLGAMVRDGQLLRNRMGEFLPAQQLDLIPGVVIANP
DGFGFLRPESGGGDDLFLPPMEMRKAMHGDRVLARVTGVDRRGRREGAILRVLERRLNRL
IGRFCLEAGISYVVPDDRRIQRNVQVPPDERLGAQNGQLVVVELIEAPDEHGPQRTPIGR
VLAVLGDRLTASLAVQAAIHGHEIPHEFPQAVLDEASDVPLTVPEEIAAQRVDLRELPLV
TIDGEDAKDFDDAVYCETNRNGFRLVVAIADVSHYVRPGTPLDDEAQKRATSVYFPGFVV
PMLPETLSNGICSLNPKVDRLCFVCDMQIDREGEVTRSKFYEAVMNSHARLTYTQVWNAV
GDDVREEDREEAIERIGSLMPNVERLHQLYQILAKARERRGAIEFESSEVRFVLGPKGEV
VQAGMLQRNDAHKLIEECMIAANVEAAKYLMAKHVPSPFRIHERPPEQKYADLLEFLKEF
KLRMPPWNRVEPRDFTALLKKIRERPDAALIESVLLRSQSLAVYSPENVGHFGLALEAYT
HFTSPIRRYPDLLVHRAIKYALTGGRPEKYRYSPSEMAALTLQCSERERRADEAEREVDE
RYRAAWMEQHVGGEFDGVISGVTSFGLFVELVDSKVTGMVHVTQLPHDYYQFDPIRKTLS
GERAGREFRLGDRVRIVVMKASVEDRKIDFKLVEDRGVKPLPPRGQPAKRVKQKY
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaaagcctcaggcgcatcgaaatccggctcgaaatcgggcttctccaaggca
ggctcgtcgaaggcgggctcatcgaaggcaggcccgcgcggcggcaagggcggcggcaag
cccggcgccggcaaggcgacatccggcacgaccggcaagttcgccagcggatccggtggg
cgcaaggcaccgccggcacgccctggctggatgcccgaaccgccaccgccggcgcatcgc
ggtcgcggcggtgccgcatcgggtttccatgatccttacgccgcacgcgaggccgcacgt
tacgagcagcccatcgccagtcgcgaaatgatcctgcagttgctggtgcaggccgatggc
ccgctgtcggccgacgagctcgcgcaacgtctcggtctgaccgaggaaagccgcttcgac
gcgctgggcaagcgcctgggcgcgatggtgcgcgacggccagttgctgcgtaaccgcatg
ggcgagttcctgccggcgcagcagctcgatctgatccccggcgtggtgatcgccaatccc
gacggtttcggcttcctccgaccggaatcgggcggcggcgacgacctgttcctgccgccg
atggaaatgcgcaaggcgatgcacggcgaccgcgtgctcgcgcgcgtcaccggcgtggac
cgtcgcggccgtcgcgaaggcgcgatcctgcgcgtgctcgaacgccgcctcaatcgcctc
atcggccgcttctgcctggaagccggcatcagctacgtcgtgcccgacgaccggcgcatc
cagcgcaacgtgcaggtgccgccggacgagcgactgggcgcgcagaacggccagctggtc
gtggtggaactgatcgaggcgccggacgagcacggcccgcagcgcacgccgatcggccgc
gtgctcgcggtgctgggcgatcgcctcaccgcgtcgctggcggtgcaggcggcgatccac
ggccacgagatcccgcacgaattcccgcaggccgtgctcgacgaagccagcgacgtgccg
ctcaccgtgccggaggaaatcgccgcgcagcgcgtggacctgcgcgagctgccgctggtc
accatcgacggcgaggacgcgaaggacttcgacgatgcggtgtattgcgagaccaatcgc
aacggtttccgcctcgtcgtcgccatcgccgacgtctcgcattacgtgcgccccggcacg
ccgctggacgacgaagcgcagaagcgcgccacctcggtgtacttccccggtttcgtcgtg
ccgatgctgccggagacgctgtccaacggcatctgctcgttgaacccgaaggtcgaccgt
ctgtgcttcgtctgcgacatgcagatcgatcgcgaaggcgaagtcaccaggtcgaagttc
tacgaagcggtgatgaactcgcacgcgcgcctcacctacacgcaggtgtggaatgcggtc
ggcgacgacgtgcgcgaggaagacagggaggaggcgatcgagcgcatcggctcgctgatg
cccaacgtcgagcggctgcaccagctgtaccagatcctcgccaaggcgcgcgagcgccgc
ggcgcgatcgaattcgaatccagcgaagtgcgcttcgtgctcggcccgaagggcgaggtc
gtgcaggccggcatgctccagcgcaacgacgcgcacaagctgatcgaggaatgcatgatc
gccgcgaacgtggaggcggcgaagtacctgatggcgaagcacgtgccgtcgccgttccgc
atccacgagcgcccgccggagcagaagtacgccgacctgctggaattcctgaaggagttc
aagctgcgcatgccgccgtggaatcgcgtcgagccgcgcgatttcaccgcgctgctgaag
aagatccgcgagcgccccgatgcggcgctgatcgagtcggtgctgctgcgcagccagtcg
ctggcggtgtattcgccggaaaacgtcggccatttcggcctggcgctggaggcgtacacg
cacttcacctcgccgatccgtcgctatcccgatctgctggtgcatcgcgcgatcaagtac
gcgctgaccggcgggcgtcccgagaagtaccgctattcgcccagcgaaatggccgcgctc
acgctgcagtgttccgaacgcgagcgccgtgccgacgaagccgagcgcgaagtcgacgag
cgttaccgcgccgcgtggatggaacagcacgtcggcggcgagttcgacggcgtgatcagc
ggcgtcaccagtttcggcctgttcgtcgagctggtcgactcgaaggtgaccggcatggtc
cacgtcacgcagctgccgcacgactattaccagttcgatccgatccgcaagacgctgtcg
ggcgagcgcgccggccgcgagttccgcctcggcgatcgcgtgcgcatcgtggtgatgaag
gccagcgtcgaggaccgcaagatcgacttcaagctggtcgaggaccgcggcgtgaagccg
ctgccgccgcgcgggcagccggccaagcgggtgaagcagaagtactga
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