Loxodonta africana (African savanna elephant): 100671297
Help
Entry
100671297 CDS
T04351
Symbol
COL1A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
lav
Loxodonta africana (African savanna elephant)
Pathway
lav04151
PI3K-Akt signaling pathway
lav04510
Focal adhesion
lav04512
ECM-receptor interaction
lav04611
Platelet activation
lav04820
Cytoskeleton in muscle cells
lav04926
Relaxin signaling pathway
lav04933
AGE-RAGE signaling pathway in diabetic complications
lav04974
Protein digestion and absorption
lav05146
Amoebiasis
lav05165
Human papillomavirus infection
lav05205
Proteoglycans in cancer
lav05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
lav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100671297 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100671297 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100671297 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
100671297 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
100671297 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
100671297 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
100671297 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100671297 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
100671297 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
100671297 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
100671297 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
100671297 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lav00536
]
100671297 (COL1A1)
Glycosaminoglycan binding proteins [BR:
lav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100671297 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
100671297
NCBI-ProteinID:
XP_010592644
LinkDB
All DBs
Position
Unknown
AA seq
1455 aa
AA seq
DB search
MFSFVDIRLLLLLAATALLTHGQEEGQDEDIPSVTCVQNGLRYYDRDVWKPEPCRICVCD
NGNVLCDDVMCDETKDCPGARVPEGECCPVCPNSGQXGSGLEGPKGDTGPRGPRGPAGPP
GRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSAGGISVPGPMGPSGPRGL
PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP
QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE
RGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSEGPQGV
RGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPAGPQGPSGAPGP
KGNSGEPGAPGSKGDAGAKGEPGPVGIQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGG
PGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP
DGKTGPPGPAXQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGA
AGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGA
PGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQGAPGLQGM
PGERGAAGLPGPKGDRGDAGPKGADGSPGKDGPRGLTGPIGPPGPAGAPGDKGEAGPSGP
AGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPTGA
PGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGP
RGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIGGQRGVVGLPGQRGE
RGFPGLPGPSGEPGKQGPSGSSGERGPPGPAGPPGLAGPPGESGREGAPGAEGSPGRDGS
PGPKGDRGETGPSGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPAGPAGVRGPAGP
QGPRGDKGETGEQGDRGLKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA
PGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGAFDFSFLPQPPQEKA
HDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKMCHSDW
KSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKEKRHVWYGES
MTDGFQFEYGGEGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNLKKALL
LQGSNEIEIRAEGNSRFTYSVTEDGCTSHTGTWGKTIIEYKTTKTSRLPIIDVAPLDVGA
PDQEFGFDIGPVCFL
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacatccggctcctgctcctcttagcggccaccgccctcctcacg
cacggccaagaggagggccaagacgaagacatcccgtcagtcacctgcgtacagaacggc
ctcaggtactatgaccgagacgtgtggaaacccgagccctgccggatctgtgtctgcgac
aacggcaacgtgttgtgcgatgacgtgatgtgcgacgaaaccaaggactgtccaggcgcc
agagtccccgagggcgagtgctgtcctgtctgccccaacagcggacagtaaggctcaggc
ctagagggacccaaaggagacactggcccccggggcccaaggggacctgccggcccccct
ggacgagatggcatccctggacagcctggacttcccggaccccctggaccccctggacct
cctggaccccctggccttggaggaaactttgctccccagctgtcttatggctatgatgag
aaatcagctggaggaatttccgtgcctggccccatgggcccctctggtcctcgtggtctt
cctgggccccctggtgcacctggtccccaaggtttccaaggtccccctggtgagcctggc
gagcctggagcctcaggtcctatgggtccccgtggtccccctggccctcctggcaagaac
ggagatgatggtgaagctggaaagcctggtcgtcctggtgagcgtggtcctcctgggcct
cagggtgctcggggattgcccggaacagctggcctccctggaatgaagggacacagaggt
ttcagtggtttggatggtgccaagggagatgctggtcctgctggtcccaagggtgagcct
ggtagccctggtgaaaatggagctcctggtcagatgggcccccgtggtctgcctggtgag
agaggtcgcccaggagcccctggccctgctggtgctcgtggcaatgatggtgctactggt
gctgctggaccccctggtcccactggtcccgctggtcctcctggcttccctggagctgtt
ggtgccaagggtgaagctggtccccaaggagcccgaggctctgaaggtccccagggtgtg
cgtggtgagcctggcccccctggccctgctggtgctgctggccctgctggaaaccctggt
gctgatggacagcctggtgctaaaggtgccaacggtgctcctggtattgctggtgctcct
ggcttccctggtgcccgaggccctgctggaccccagggtcccagcggcgctcccggtccc
aagggtaacagcggtgaacccggtgctcctggcagcaaaggtgacgctggcgccaaggga
gagcccggccctgttggtattcaaggaccccctggccctgctggtgaagaaggaaagcga
ggagcccgaggtgaacccggacccactggcctgcccgggccccctggcgagcgtggtgga
cctggtagccgtggtttccctggtgcggatggtgttgccggtcccaagggtcccgctggt
gaacgtggttctcctggccctgctggtcccaaaggttctccaggtgaagctggtcgtccc
ggtgaagctggcctgcctggtgccaagggtctgactggaagccctggcagccctggtcct
gatggcaaaactggcccccctggtcccgccngtcaagatggtcgccccggacccccaggt
ccccctggtgcccgtggtcaggctggtgtgatgggattccctggacctaaaggtgctgct
ggagagcctggcaaagctggagagcgtggtgttcccggaccccctggtgcagttggtgct
gctggcaaagacggagaagctggagctcagggaccccctggccctgctggtcctgctggt
gagagaggtgaacaaggccctgctggctcccctggattccagggtctccctggcccagct
ggtcctcctggtgaagcaggcaaacccggtgaacagggtgttcctggagaccttggtgcc
cccggcccctccggagcaagaggcgagagaggtttccctggcgagcgtggtgtgcagggt
cctcctggtcctgcaggtccccgtgggtccaatggtgctcctggcaatgacggtgctaag
ggtgatgctggtgctcctggagcccccggtagccaaggtgcccctggccttcagggaatg
cctggtgaacgtggtgcagctggtcttccaggccccaagggtgacagaggtgatgctggt
cccaaaggtgctgatggttctcctggcaaagatggccctcgtggtctgactggccccatt
ggtccccctggccctgctggtgcccctggtgacaagggtgaagctggtcccagcggccct
gctggtcccactggagctcgtggtgcccccggagaccgtggtgagcctggtcctcccggc
cctgctggcttcgccggcccccctggtgctgatggccaacctggtgctaaaggtgaacct
ggtgatgctggtgctaaaggcgatgctggtccccctggccctgctggacccactggagcc
cctggccccattggtaatgttggtgctcctggacccaaaggtgcccgtggcagtgctggt
ccccctggtgctactggtttccctggtgctgctggccgagtcggtccccctggcccctct
ggaaatgctggaccccctggccctcctggccctgctggcaaagaaggcggcaaaggtccc
cgtggtgagactggccctgctggacgtcctggtgaagttggcccccctggtccccccggc
cctgctggcgagaaaggatcccctggtgctgacggtcctgcgggcgcccctggtactccc
ggacctcagggtattggtggacagcgtggtgtggtcggcctgcccggtcagagaggagaa
agaggcttccctggtcttcctggcccatctggcgaacccggcaaacaaggtccttctggc
tcaagtggtgaacgtggtccccctggccccgcaggcccccctggattggctggaccccct
ggtgaatctgggcgtgagggtgctcctggtgccgaaggctcccctggacgagatggttct
cctggccccaagggtgaccgtggtgagactggaccctctggaccccctggtgctcctggt
gctcctggtgcccctggccccgtcggccctgctggcaagagtggggatcgtggtgagact
ggtcccgctggtcctgctggtcctgctggtcctgctggtgtccgtggccccgctggaccc
caaggcccccgtggtgacaagggtgagacaggtgaacagggcgacagaggcttgaagggt
caccgtggcttctccggtctccagggtccccctggccctcctggctctcctggtgaacaa
ggtccctctggagcttctggtcctgctggtccccgaggtccccctggctctgctggtgct
cctggcaaagatggactcaatggcctcccaggccccattggtccccctggtcctcgtggt
cgtactggtgatgctggccctgttggtccccctggccctcccggaccccctggtcccccc
ggccctcccagtggtgctttcgacttcagcttcttgccccagccacctcaagagaaggct
cacgatggtggccgctactaccgggccgatgatgccaatgtggtccgtgaccgtgacctc
gaggtagacaccaccctcaagagcctgagccagcagattgagaacatccggagccctgaa
ggcagccgcaagaaccctgcccgcacctgccgtgacctcaagatgtgccactccgactgg
aagagcggagagtactggattgaccccaaccaaggctgcaacctagacgccatcaaagtc
ttctgcaacatggagacaggtgagacctgcgtgtaccccactcagcccagcgtggcccag
aagaactggtacatcagcaagaaccccaaggaaaagaggcacgtctggtatggcgagagc
atgaccgacggattccagttcgaatatggcggcgaaggctccgaccccgccgatgtggcc
atccagctgaccttcctgcgcctgatgtccaccgaggcctcccagaacatcacctaccac
tgcaagaacagtgtagcctacatggatcagcagaccggcaacctcaagaaggccctgctc
ctccagggctccaacgagatcgagatccgggccgagggcaacagccgcttcacctacagc
gtcaccgaggatggatgcacgagtcacaccggaacctggggcaagacgatcatcgagtac
aaaaccaccaagacctcccgcctgcccatcatcgatgtggcccccttggacgttggcgcc
ccagaccaggaatttggcttcgacattggccctgtctgcttcctgtaa
DBGET
integrated database retrieval system
