Lycium barbarum (goji berry): 132641197
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Entry
132641197 CDS
T09483
Name
(RefSeq) uncharacterized protein LOC132641197
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
lbb
Lycium barbarum (goji berry)
Pathway
lbb03015
mRNA surveillance pathway
lbb03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lbb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132641197
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132641197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbb03019
]
132641197
Messenger RNA biogenesis [BR:
lbb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
132641197
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
AFF4_CHD
Motif
Other DBs
NCBI-GeneID:
132641197
NCBI-ProteinID:
XP_060214074
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Position
5:115823290..115829586
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AA seq
648 aa
AA seq
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MDPTTDEQLDYGDEEYGGSHKIHQYHGSGTIPALAEDEMMGEDDEYDDLYNDVNIGEGFL
LMQRSEGPTPSVDAGNGNFQAQKASFREARGGGIGSEEAKIPGVATEGKYAGTEVRFPEQ
KSGPVAEREIERPADAAQIARPSAITMTLNTQVGNSGYEGSMPMPQKTGADPIAMPEKNA
SEATPLVNSGSRVVPQMPTNQLNSSGNVNMNSPIISDTPIRSSLENGNTMLFVGELHWWT
TDAELESVLTQFGKVKEIKFFDERASGKSKGYCQVEFFDPVSAAACKEGMNGHIFNGRAC
VVAFATPQTIKQMGSSYVNKTQNQVQSQPQGRRPMNEGVGRGGANYTPGDAGRNFGRGSW
GRGGPGMQNRGPGGGPVRGRGGAMGSKNMMGNPGAGNGAGGAFGQGGLAGPAFGGPPAGL
MHPQGMMGPGFDPGFMGRGGGYGGFSGPAFPGMMPPFPAVNPMGLPGVAPHVNPAFFGRG
MAANGMGMMGTAGMDGGPHPGMWTDTSGGGWGGGEEHGRRTRESSYGGEDNASEYGGYGE
VSHDKGARSSAVSSKKERGSERDSERRHRDEREHDRERYDNREHRYREERDGYRDYRQKE
REPEYEEDYDRGQSSSRSRSRSRAVQEEGHRSRSRDTNYGKRRRAPSE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggatccaacaacagatgagcagttggattatggtgatgaggaatatggaggaagccac
aagatacaccagtaccatggaagtgggacaattcctgcactggcagaggatgaaatgatg
ggtgaagatgatgaatatgatgatctttacaatgatgttaacattggggaaggtttccta
ctgatgcagcggtcagagggtccaaccccttctgttgatgcgggaaatgggaattttcaa
gcccagaaagctagttttcgtgaagcaaggggtggtggtataggatcagaggaggcgaaa
atccctggtgttgcaacagaagggaagtatgctggcactgaagtccggttccccgagcaa
aagagtgggcctgtagctgaaagggaaattgaacgacccgctgatgctgcacaaatagca
aggccttcagcaattacgatgactctcaatactcaagtgggaaactctggttacgaagga
tccatgccaatgccccagaaaactggagctgatcctattgctatgccagaaaagaatgcc
agtgaagctacaccattggtgaattctggatcaagagttgttccgcaaatgccaactaat
caattgaattcaagtgggaatgttaacatgaatagcccaattattagtgacactcctata
aggtcatctctggagaatggcaacaccatgctttttgttggagaattgcactggtggact
actgatgctgagcttgagagtgtgttgactcaatttgggaaggtaaaggagatcaaattc
tttgatgagagagctagtggcaaatctaaaggctattgtcaagttgagttctttgatcca
gtttctgcagctgcttgcaaagaaggaatgaatggtcatattttcaatgggcgagcctgc
gttgttgcatttgcaactccacaaactataaaacagatgggttcctcgtatgtgaacaaa
actcaaaaccaggtgcagtctcagccacagggacggagacccatgaatgagggagttggc
agaggtggagcgaattacacccctggagatgctgggaggaattttggtagaggtagctgg
gggcgtggagggccgggaatgcaaaacagaggacctgggggtggaccagtgaggggaaga
ggaggagccatgggatcgaagaatatgatggggaatcctggagctggcaatggtgccggt
ggagcttttgggcaaggaggacttgcaggtccagcatttggtggtcctcctgcaggtcta
atgcatcctcagggcatgatgggtcctggttttgatcccggttttatgggtcgaggaggt
ggttatggaggattttcaggtcctgcatttccagggatgatgcctccatttccagctgtt
aatcctatgggtctacctggggtggctcctcatgtcaaccctgcattctttggtcgagga
atggctgcaaatggaatgggaatgatgggtactgctgggatggatggggggcctcatcca
ggaatgtggactgacacaagcgggggcggatggggaggaggagaagaacatggcaggaga
actagagagtccagttacggtggtgaagataatgcatcagagtatggtggctatggagag
gttagccatgataaaggagccaggtcaagtgctgtgtccagtaaaaaggaacggggttct
gagcgcgattccgagaggcggcatcgtgatgaaagagaacatgacagagagaggtatgat
aatagggagcacagatacagggaagaaagggatggttaccgggactatcgtcaaaaggag
cgtgaaccagagtatgaggaagactatgaccgtggacagtcttcttcaagatcccgtagc
agatcccgagcagtgcaggaggagggtcataggtctagatcaagagacacaaattatggg
aaacgtagacgtgcgccttctgaatga
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