Laccaria bicolor: LACBIDRAFT_142382
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Entry
LACBIDRAFT_142382 CDS
T01044
Name
(RefSeq) hypothetical protein
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
lbc
Laccaria bicolor
Pathway
lbc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LACBIDRAFT_142382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbc03019
]
LACBIDRAFT_142382
Enzymes [BR:
lbc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
LACBIDRAFT_142382
Messenger RNA biogenesis [BR:
lbc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
LACBIDRAFT_142382
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
LACBIDRAFT_142382
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
DUF3138
Motif
Other DBs
NCBI-GeneID:
6073011
NCBI-ProteinID:
XP_001877582
JGI:
142382
UniProt:
B0D1R4
LinkDB
All DBs
AA seq
615 aa
AA seq
DB search
SPHWQQQLLKCEMIRSARSPHHRARTSAMASRTVAKSAIPITNPNLVKPPLPAELNGTAS
EVSSPTTSDRPASSPPINGNAVNRPSSTVAAPAEAFRPTSIMKPPENTWSSLDMGGLNIK
NLPATSGLFTFTFLINLYLNHNALSSVPPEISKLRHLELLDISGNNLSTLPPEMGMLTQL
KELYVFDNHLTVIPFELGSLHQLQTLGVEGNPLDATLKAIIQKDGTPTLISYLRDNCPTP
PAPPLRELKVLLTEPELEALAADPNAETFRVLCYNILCERCATERLYGYTPSWALAWEYR
KDLILTEIINSGADFLCLQEVDIAAYEDYFTKNLAEHGYEGVYWPKSRSRTMNEADRRQV
DGCATFYKADRYQLVEKHLVEFSAVAMQRQDFKKTDDMFNRVLGKEHLAIVSLMEDKVTG
TRFVIANAHIHWDPAYCDVKLVQAALLVDEIEKMASHFAKYPPRPPPSASTSSIVQAYRT
PPVYTDGTKIPLIICGDFNSIPSSGVYDFLSNGTLPADHVDFKSHKYGRYTSEGLRHRFG
LKSAYAAPGAGEPPVTNYVPTFQGHIDYLWYSAANLGVNAILSGVDKDYLEKVVGFPNAH
FPSDHVCIVAEFRVK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
tcacctcactggcagcagcagttgttgaagtgcgaaatgatacgctcggcacgctcacca
caccaccgcgctcgaacaagcgctatggcctcacgcacagtggcgaaatctgctattccc
atcacaaatcccaacctcgtcaaaccccctctaccagctgaactcaatggtactgcttcg
gaggtatcctcgcccacaacgtccgatagacccgcttccagcccgcccatcaatggaaac
gcagttaatcggccttcatccactgtggcagctccagcggaggctttccgtccaacatca
atcatgaagcctcccgaaaacacatggagttcgctagacatgggtggattgaatattaag
aaccttcctgcaacttcaggcctctttacctttactttcctcatcaacctctacctcaat
cacaacgccctctcatccgttcctccagagatatccaagctccggcacctggagctcctt
gacatctccggcaacaatctctccacactccctcccgaaatgggtatgcttacccagctg
aaggagttgtacgtattcgacaaccacctgaccgtgatcccttttgaattggggagcctg
catcaactgcagacactgggcgtagaaggcaatccgctggacgcaaccctgaaggcaata
attcagaaggacggtacaccaaccctcatttcctacttgcgcgataattgtccgacacct
ccagcgcctccgctccgagagctgaaggtgcttctcactgaaccggaactggaggccctg
gccgccgaccccaacgcggagacgttccgcgttttatgttacaacatcctatgtgagagg
tgtgcaacggagcggctgtatgggtacacaccttcgtgggcgttggcatgggagtaccgg
aaagacctgatactaacggagatcatcaactccggcgcggactttttatgcctgcaagag
gtcgatatagctgcgtatgaggattatttcaccaagaatctagcggagcacggatatgaa
ggggtgtattggcccaagtcgcggtcgaggacgatgaatgaggcggaccggaggcaggtg
gacgggtgtgcgacgttttacaaggcggacagataccagctggtggaaaagcatctggta
gagttcagcgcagtcgccatgcaacgacaagacttcaagaagacagacgacatgttcaac
cgggtgctagggaaagagcatctcgccatcgtctcactcatggaggacaaagtcactggg
acacggtttgtcatcgccaatgcgcacattcattgggacccagcgtactgtgacgtcaag
ttggtgcaggctgcattgttggttgacgagattgagaaaatggccagtcactttgccaag
taccctcctcgacctccaccatcagcatcaacgtcgtctatcgtgcaagcataccgtaca
ccaccagtgtatacagacggcacgaagatcccgctgataatctgtggcgacttcaactcc
attccatcatcaggcgtatacgacttcctgtcaaacggaaccctacctgctgaccacgtg
gatttcaagtctcacaaatatggccggtacacatctgaaggcttgcgtcaccgttttggc
ttgaagagcgcgtacgcggcgcctggggctggcgaacctcccgtgacgaactatgtgccc
acgttccaagggcacattgattatctgtggtactcggctgcaaatttgggggtgaacgct
attctgagcggggttgataaggattatttggagaaggtcgttgggttccctaatgctcat
ttcccttcagaccacgtatgcatcgtcgccgaattccgtgtgaaa
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