Levilactobacillus brevis ATCC 367: LVIS_1414
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Entry
LVIS_1414 CDS
T00406
Name
(GenBank) mRNA degradation ribonuclease J1/J2, metallo-beta-lactamase superfamily enzyme
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lbr
Levilactobacillus brevis ATCC 367
Pathway
lbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LVIS_1414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbr03019
]
LVIS_1414
Messenger RNA biogenesis [BR:
lbr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LVIS_1414
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
SIS_2
Motif
Other DBs
NCBI-ProteinID:
ABJ64512
UniProt:
Q03QL0
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Position
1382463..1384142
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AA seq
559 aa
AA seq
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MNKLNVKNNETAIFGVGGLGEIGKNTYGIQFQDEIILIDAGIKFPEDELLGIDYVIPDYQ
YLVENQAKIKALVITHGHEDHIGGIPYLLKALNVPVYAGPLALALIKNKLEEHGLLKSTE
LHAIDDDTVLKFRKMSVSFFRTTHSIPDTLGVAVHTPVGVIVETGDYKFDLTPVTNQPPD
LQKMAKLGAEGILCLMSDSTNAERPIWTKSEKWVGKSIRKIFDQVEGRVIFATFASNISR
IETACETALAHGRKIAVFGRSMEAAIVNGRELGYLNIPDDALVDANAIRSLPANKVMILC
TGSQGEPMAALSRIANGTHRQIAIQPGDTVVFSSNPIPGNTISVNRVINELEEAGANVIH
GKVNNIHTSGHGGQEEQKLMLRLMQPKFFMPIHGEYRMLKIHTELAEQCGVPLDHSFILQ
NGDVLALTKDSARVAGHFTAGDVYIDGSGIGDIGNVVLRDRQLLSEEGLVVVVATIDLKN
QEIKAGPDLLSRGFVYMRESGELLNEGRRRVFQTIRRAMRNPKATEASIRNAVIDDLQNF
LFEKTERHPMILPMFIMTK
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagttaaacgtcaaaaataacgaaactgctatctttggcgtgggtggacttggt
gaaattggaaaaaacacctatggtattcaattccaagatgaaatcatcttaattgatgcc
gggattaaatttccagaagacgaactattggggattgattatgtcattcccgattaccag
tatctcgttgagaaccaggctaaaatcaaagcgcttgtgatcacccacggtcatgaagac
catattggcggtattccttatttactcaaggcactcaatgtccccgtatatgcgggacca
ttagcccttgcgttaatcaagaacaaacttgaagaacacggattacttaaatcaactgaa
ctacacgcaattgatgatgatacagtgcttaagttccgcaagatgagcgtttctttcttc
cggacaacccactcgattccagacacattaggggtcgctgtgcatacaccggtcggggtt
attgtggaaacgggtgactataagttcgacttaacacccgttaccaatcagccgcctgat
ctgcaaaagatggccaagctcggagctgaaggcattctctgtcttatgtctgacagtacc
aatgctgaacgcccgatctggaccaagtcggaaaaatgggttggtaaatcgattcgcaag
atttttgaccaagtcgaaggtcgcgttattttcgccactttcgcatctaatatctctcgg
attgaaactgcctgtgaaacagcattggctcatggccgtaaaattgcggtctttggtcgt
tcgatggaagcagccattgttaacggtcgcgaattgggctatctaaatattcccgatgac
gccctagttgacgcaaatgctattcgttccctacctgctaacaaggtaatgattctttgt
accggctctcagggtgaaccgatggctgcattgtcacgaatcgccaatggaacccaccgc
cagattgctattcaacccggtgacacggtggtcttctccagtaacccaatccctggtaat
accatttcggtcaatcgggtgattaacgaactggaagaagctggtgctaacgttatccac
ggtaaggtcaataacattcatacgtctggccatggtggtcaagaagaacaaaagctcatg
ctacgcttgatgcagcctaaatttttcatgccaattcacggtgagtaccgaatgttaaaa
atccacacagagttagccgaacaatgtggcgttcccttagaccacagctttatccttcaa
aatggggatgttttagccctaactaaggattctgcacgggtagcgggtcactttaccgct
ggggatgtttacatcgacggctctggtattggtgacattggtaacgtggttttgcgtgat
cgccaactactttcagaagaaggtttagtcgtagtcgttgcaaccatcgatttgaagaat
caagagatcaaagctggtcctgatttgttgtctcgtggatttgtttacatgcgtgaatct
ggtgaactccttaatgaaggacgtcgtcgcgtctttcaaacgattcgccgagccatgcgt
aatcccaaagcaacggaagcttcaattcggaacgcggtgattgatgacttacaaaatttc
ctgtttgaaaaaacagaacgtcatccgatgattttgccgatgttcattatgactaagtag
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