Lachnospiraceae bacterium KM106-2: lbkm_1124
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Entry
lbkm_1124 CDS
T08927
Name
(GenBank) ribosomal large subunit pseudouridine synthase D
KO
K06180
23S rRNA pseudouridine1911/1915/1917 synthase [EC:
5.4.99.23
]
Organism
lbx
Lachnospiraceae bacterium KM106-2
Brite
KEGG Orthology (KO) [BR:
lbx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lbx03009
]
lbkm_1124
Enzymes [BR:
lbx01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.23 23S rRNA pseudouridine1911/1915/1917 synthase
lbkm_1124
Ribosome biogenesis [BR:
lbx03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
lbkm_1124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
ThiS
Motif
Other DBs
NCBI-ProteinID:
BBF42442
UniProt:
A0A7U6QIP7
LinkDB
All DBs
Position
complement(1172632..1173552)
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AA seq
306 aa
AA seq
DB search
MEERKLEFKVDADQKGIRIDKVISTYCDDMTRSYIQKLLKEEAVLVNDKIVKANYKVAEN
DEILLQLPELKELDVEPEDIPLDILYEDSDVILINKPKGMVVHPAAGHYSGTLVNALLHH
CKGQLSGINGVMRPGIVHRIDMNTTGVLIVCKNDNAHNCIAEQLKVHSITRKYEAICYGT
FKTEDGTIEGPIGRHPVDRKKMAINPKNGKHAVTHYRVLENLGKGYSHVECTLETGRTHQ
IRVHMASIHHPLLGDDIYGPNKNPFHLEGQALHARVLGFIHPTTKEYMEFEAPLPEYFTT
LLNKLR
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacgtaaactagaatttaaagtagatgccgatcaaaagggcatccgtattgat
aaagtcatatctacctattgtgatgatatgacaagatcctatattcagaaattactaaaa
gaagaagctgtcttagttaatgataaaatagtaaaagcgaactataaggtagctgaaaac
gatgaaatcttacttcagcttcctgaattgaaagaacttgatgttgaaccagaagatatt
cctttagatatcttatatgaagattctgacgttatcttaatcaataagccaaagggaatg
gtcgttcatccagctgccggtcattacagtggaacgttagtaaatgcactcctacatcat
tgtaaaggacaattatccggaattaatggtgtgatgcgacctggtatcgttcatcgtatc
gatatgaatacaacaggagttctgatcgtttgtaaaaacgataatgctcataactgtatc
gcagaacaattaaaagtccattctattacacgtaaatatgaagctatttgttatggaaca
tttaagacggaagatggaacgatcgaaggaccaattggccgtcatcctgtcgaccgaaag
aagatggcgatcaatccaaaaaacggaaagcatgccgtaacgcattaccgtgttctcgaa
aatttaggaaaaggatattcgcatgtagaatgtacactagaaaccggtcgtactcatcaa
attcgtgtccatatggcaagtatccatcatcctttacttggcgatgatatttatggtcca
aataaaaatccattccatcttgaaggtcaggcgctccatgctcgtgtacttggatttatt
catccgacaaccaaagagtatatggagtttgaagctccattaccagaatactttactaca
ctattaaataagctaaggtaa
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