Lates calcarifer (barramundi perch): 108872879
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Entry
108872879 CDS
T04895
Name
(RefSeq) high-affinity choline transporter 1
KO
K14387
solute carrier family 5 (high affinity choline transporter), member 7
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
lcf02000
]
108872879
Transporters [BR:
lcf02000
]
Solute carrier family (SLC)
SLC5: Sodium glucose cotransporter
108872879
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Gene cluster
GFIT
Motif
Pfam:
SSF
Motif
Other DBs
NCBI-GeneID:
108872879
NCBI-ProteinID:
XP_018516296
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Position
LG16_LG22:complement(19540736..19546640)
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AA seq
554 aa
AA seq
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MALNVPGLVVTIIFYLLVLGIGIWASFKSKKDENRTQANHADMALLGDRKISLVVGIFTT
TATWVGGTFIIGTAETVYNPKLGLIWAVMPLAATLAFTLGGLFFAEPMRDRKYVTMMDPF
QIKYGNGLSGLLSVAPLLSEIIWVTSTLISLGVTMSVILDLSYAVCIWISAAVAITYTLL
GGLYSVAYTDIIQLSLIFITSWLCVPFVLMSPASVDITTTSFNHTFQAPWVGTLTADRVG
RWIDIFLLLSVGDLGFQDFHQRTLSASSSATAKLRCYAAAFLIPTFGIPPVLIGAAAAST
DWNLTSYGSPPPYERGQTGLILPLSLHHLTPPYISVIGIGAVAAAVMSSTDSALLSAASI
FSSNIYKKNLRTKASENEIRWVIRISVVLFGLAGASLTFLHTGVMAFWVLGGEIAYIMMF
PQLVCVLFFNISNGYGATVGFLVGFFLRLLCGEQLLGLPPAIHFPGCTLEDGVYVQYSPI
RTICMLVAFATILLVSYLSSLLFNKGLIPEKCDVFQVKIQHSPRTQIPTGGNENNSKPLC
ENAGVSDPLFESTC
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggctctcaatgtcccaggactggtagtcaccatcatattctacctgctggtgctcggg
attggtatctgggcttccttcaaatccaaaaaggatgaaaacaggacacaggcaaaccac
gcagacatggccctgctgggggacagaaaaatcagcttggtagtggggatcttcactaca
accgctacctgggttggtgggaccttcatcatcggcacagcggagaccgtgtacaatcca
aagttgggactgatttgggctgtgatgcctttagcagcgacattggccttcactcttggt
ggtcttttctttgctgagccgatgagagacaggaagtatgtgaccatgatggaccctttc
cagatcaagtatggaaatggactgagtggactcctgtctgtggcacctctgctgtcagaa
attatttgggtaacttcaacgctgataagcttgggtgtaaccatgagtgtgatcctggat
ttgtcctatgctgtgtgcatctggatctctgctgctgtggccatcacctacacactgctg
ggaggtctctactctgtggcctacacagatattatacagctctctctcatttttatcacc
tcatggctgtgcgtcccatttgttctcatgagtccagcatctgttgacatcaccaccaca
tccttcaaccacaccttccaggctccctgggtcggcactctgactgcagacagagtcggg
aggtggatcgatatctttttattactgagtgtaggagacctcggttttcaggacttccac
caaaggacattatctgcctcttcttcagctacagccaagttacgatgttacgctgcagca
tttctcatccccacatttggaattcctcctgtgctcattggagccgcggctgcatcgaca
gactggaatctgacctcgtatggttctccgcctccgtatgaacgaggtcagacaggtctg
attttacccctctccctgcaccacctaaccccaccctacatctccgtcatcggcattgga
gcagtggctgctgccgtgatgtcatcaactgactctgccctgctgtctgctgcctccatc
ttctcctcgaatatctacaagaagaacttgaggaccaaggcatcagagaatgagatccgc
tgggtgattcgaatttctgtggttttatttggcctggccggtgcatcactcaccttcctc
cacaccggtgttatggcgttctgggtcctgggtggagaaatcgcctacataatgatgttc
ccgcagctggtctgcgtgctgttcttcaacatctccaatggttacggtgccactgtggga
ttcctggtggggttttttttaagacttttgtgtggagagcagttgctagggctaccacct
gccatccatttcccaggatgcacccttgaagacggtgtttacgttcagtattcccctatc
aggaccatctgtatgctggtggcttttgccaccattttgctggtctcctacctgtcatct
ctgctcttcaacaaaggactgatacctgagaagtgtgatgtgtttcaagttaaaatccaa
cattcaccgaggacacagataccaacaggtggcaatgagaacaactcaaaacctctgtgt
gagaatgctggggtttcagatccactgtttgaatcgacatgttga
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