Lates calcarifer (barramundi perch): 108873133
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Entry
108873133 CDS
T04895
Symbol
rpgrb
Name
(RefSeq) LOW QUALITY PROTEIN: retinitis pigmentosa GTPase regulator b
KO
K19607
X-linked retinitis pigmentosa GTPase regulator
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
lcf03037
]
108873133 (rpgrb)
Cilium and associated proteins [BR:
lcf03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108873133 (rpgrb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
108873133
NCBI-ProteinID:
XP_050921871
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Position
LG7_2:complement(1130355..1139405)
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AA seq
1223 aa
AA seq
DB search
MAGEAEDEIPESGAVFTFGKSKFAENVPSKFWLKNDVPLKIACGDEHTALITENGKLFMF
GSNNWGQLGLGSKLTVKKPTCVKALKSEKVQLVACGRNHTLICTAQGKVYASGGNSEGQL
GLGDCEERTAFQRVDFFDSHGPIKMLAAGSNTSAALTESGKLFMWGDNTEGQIGLGKESH
ASSPQEISVGQPISWVSCGYYHSALVTVDGALYTFGERDSGKLGLGTDQLPRHRVPQLVK
SIKEPVTQVACGGGHTVALTEDDVYTFGLGQFGQLGHGTFIFESRLPRVVEHFKKGRVCQ
VACGENHTAVITDGGLLYTFGDGRHGKLGLGEENFTNQFKPTLCPRFLKYNVQAAVCGGC
HMVVLARPRDQSCGDVTLEEDDVTEDYLEKPYVELLGDTGDSSTLQRSLSARVRRRERER
SPDQFGAMFRTLPTMTPSYLHPPPPVSSQTIPPRLPPAELRHGKVPNGTHKHGSPGSKKK
AQAGGETDSAAESLTDTDSVKGLGETTDFLNMTHVMKMDPGDKTLTLSPVQKRKGKHGKT
VIGQKENQTKERKLSKESSFSSTSPSRKSETASARQALPTELLRSHSAHSLASRSPQRLK
TTSQNKENLIMSMEELEKRPSKNKALSVGDIRKAASKQRPRPAQGKSQLIEVSRKQVQGS
KQSPEIKRTASGGSSEPAGAKVKQVQAKPVRGKPTVVQSQRAAVSSPGKRSHRDSPGFHL
SDEESTSSSRLVSEVKRHSKSKEEADLSKKSKNEKNKKEAQSKKESKVKEASGLGLLAGA
ASLAAGSVLAHEVASRGRVSSPSPSPSDSSRGVLRGRKSRSDESESYAADFSNKSAVSIN
IIPAPESPEVSTSQDEKGTSQDESEEQTDSAAAKQQEEEDEDEEGQRTSADVSEEEEEEE
EEEEEEESVKKVTEEEDDSDTLQPEDKSETDADEEEEESAAEEEEEEEEEEEESRTAGSE
SETEEKESKGGDAEEEEEEEEGSSHDTESKGRETEDEEEEGEEEEGDLESEGEEEEGESE
SLKSSEEGESEGEEEEEEEEKESSAEEESSEEEESEEEEESEAQEEEGKEEEEESESEEE
EEEEEEEEEEEEEGEEEEEEEEEEEEEEKEEEEEGEEEEEEEQKSEEEEEEEEEEEESRT
AGSESETEEKESKGGDEEAEEEEDDDDEEEEEEEEEEEEEEEEVKKVKRQSTKSKQRSGV
KGQAAGESEEFWGDVLPQYLNLK
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggcaggggaggctgaggacgagataccagaatcaggagcagttttcacttttggaaag
agtaaatttgctgaaaatgtccccagtaagttctggcttaaaaatgacgtccctctcaaa
atagcttgtggggacgaacataccgccttaataacagaaaatgggaaactcttcatgttc
ggcagcaacaactggggccagctcggtctggggtccaaactgactgtgaaaaagccaaca
tgtgtcaaagctctgaagtctgagaaagttcagcttgtggcctgtggcagaaaccacacc
ctcatctgcaccgctcagggaaaagtgtacgcctcaggtgggaacagtgagggtcagctg
gggctcggcgactgcgaggagaggacggcgtttcagagagtcgatttctttgattcgcac
gggccgatcaaaatgctcgctgccggctcaaacacctcagctgctctcacagagagcggt
aagctgttcatgtggggtgacaacacggagggtcagattggtctggggaaggagagtcac
gcctcctcgccacaggaaatcagcgtggggcagccgatcagctgggtgtcctgtggatac
taccactctgccttagtgacagtggacggagctctgtacacgtttggcgagcgcgacagc
ggcaaactgggtctgggcaccgaccagctgccccgacaccgagtccctcagctggtgaag
agcatcaaggagccggtgacgcaggtggcctgtgggggcggacacactgtggctcttaca
gaggatgacgtgtacacgttcggcctcggtcagttcggacagctcggccacgggacgttt
attttcgagtctcggctgccgcgtgtggtcgaacacttcaagaagggtcgtgtctgtcag
gtggcctgtggagagaatcacaccgctgtcatcactgacggcggtttgctgtacacgttt
ggagacggcagacatggcaaactgggcctgggagaagaaaacttcaccaaccagttcaaa
ccaactctgtgtccccgcttcctcaagtataacgttcaggcagctgtgtgcggcggctgt
cacatggtggtgttggctcggccgagggatcagagctgcggcgatgtgacgctggaggag
gacgacgtgacggaggattacctggagaagccgtacgtggagctgctgggggacacgggc
gactcctccaccctgcagaggagcctctccgcccgggttcgcaggagggagagggagcga
tctccagatcagttcggcgccatgttccgcactctgcccaccatgacgcccagctacctc
cacccgccgccgcccgtctccagccagaccatcccgcccaggctgcctccggctgagctg
aggcacgggaaggttcccaacggcacccacaaacacgggagcccggggtcaaagaaaaag
gcgcaggcagggggcgagacagacagcgctgctgagagcctgactgacaccgacagcgtt
aaaggcctgggagaaaccactgacttcctcaacatgacacatgtgatgaagatggatcct
ggtgataaaacactcactctgtctccagttcagaagaggaagggtaagcatggtaagacc
gttataggacagaaagagaaccaaacaaaggagagaaagctctcgaaagagagtagtttc
tcctcaacctccccgtctcgtaagagcgagaccgcctctgctcgccaggcgctgcccacc
gagctcctgaggagccacagcgctcactctctggcctctcgcagtccacagagacttaag
acaacaagccagaacaaagagaatctgattatgtccatggaggagctggagaagagaccc
agtaagaacaaagctctgagtgtaggggacatcaggaaggcagcgtctaagcagcgtccc
aggccagctcagggtaaaagccagctgatagaggtcagcaggaagcaggtgcaaggctcc
aaacaaagtcctgaaataaaaaggacagcttcaggtggcagctctgaacctgcaggggcc
aaagtgaagcaagtgcaggctaaacctgtgagaggcaaaccgacagtcgtgcaaagtcaa
cgtgcagcagttagctcaccaggtaaacgcagtcacagggactcacctggctttcacctg
agtgacgaggaaagcacgagtagctcccgactggtttctgaggtgaaaagacactccaaa
tctaaagaggaggcagatttatccaaaaaatcaaagaatgaaaaaaacaaaaaagaggct
cagtcaaaaaaagagtccaaagttaaagaggcgtcaggtctcggcctgctcgctggagct
gcctcactcgcagccggatcggtgttagcgcacgaggtggcgtccagaggccgtgttagc
tcaccatcaccatccccgtctgacagcagccgtggcgtcctgagaggcaggaaatcaagg
agcgacgaatcagaatcctacgccgcagatttcagcaacaagtcggccgtcagcatcaac
atcatacctgcacctgagagtcctgaggtgagcacgagtcaggacgagaagggaacaagt
caggatgaaagtgaggagcagacagactctgcagctgccaaacagcaggaggaggaggat
gaagatgaggaggggcagagaacgagtgcagatgtgagcgaggaggaagaagaagaggag
gaggaggaggaggaggaagagagcgttaagaaagtcacagaggaagaagatgacagcgac
actcttcagccagaggataagtcagaaactgatgcagatgaggaggaagaggagagcgct
gctgaggaagaggaggaggaggaggaagaggaggaagaaagcagaacagcaggaagtgaa
agtgagactgaagagaaagagagcaaaggaggagacgcagaggaggaggaggaggaggag
gaagggtcaagtcatgacacagaaagcaagggaagagagactgaagacgaggaggaggaa
ggtgaggaagaagagggagatttggagagtgagggcgaggaagaggagggtgaaagtgag
tctttaaagtcttcagaggagggtgagagtgagggagaagaggaggaggaagaggaggaa
aaggagagtagtgctgaggaggagagtagtgaggaagaagagagtgaagaggaggaggaa
agtgaagcgcaggaagaggaaggaaaagaggaagaggaggagagtgagagtgaggaggag
gaagaagaggaagaggaggaggaagaagaggaggaggagggggaagaagaagaagaagag
gaggaggaggaggaggaagaagaaaaagaagaggaggaggagggggaagaagaagaagaa
gaggaacaaaaaagcgaggaagaggaggaggaggaggaagaggaggaagaaagcagaaca
gcaggaagtgaaagtgagactgaagagaaagagagcaaaggaggagacgaagaggctgag
gaggaagaggatgatgatgatgaggaggaggaagaagaagaagaggaggaggaggaggag
gaggaagaggtcaagaaagtcaaaagacaaagtactaaatctaaacagaggtcaggggtc
aaaggtcaggcggcgggggagtcagaggagttctggggtgatgttttacctcagtacctc
aacctgaaataa
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