Lates calcarifer (barramundi perch): 108874044
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Entry
108874044 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4-like
KO
K13305
E3 ubiquitin-protein ligase NEDD4-like [EC:
2.3.2.26
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04120
Ubiquitin mediated proteolysis
lcf04144
Endocytosis
lcf04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108874044
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108874044
09144 Cellular community - eukaryotes
04530 Tight junction
108874044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108874044
04121 Ubiquitin system [BR:
lcf04121
]
108874044
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108874044
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108874044
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
HECT type E3
108874044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
MUG113
Motif
Other DBs
NCBI-GeneID:
108874044
NCBI-ProteinID:
XP_050928886
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Position
LG9:13818052..13861261
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AA seq
1012 aa
AA seq
DB search
MAANYEPIYGLSEDEHETRVLRVKVIAGIDLAKKDIIGASDPYVKLSLYVADENRELALV
QTKTIKKTLNPKWNEEFYFRVCPQNHRLLFEVFDENRLASSKNGLFHLGQTRDDFLGQVD
VPLSHLPTEDPAMERPYTFKDFLLRPRSHKSRVKGYLRLKMAYLPKQGGHEEEAGEMREE
AEGWDESADSGSQRPQQLLPPLPPGWEEKVDNLGRTYYVNHNNRSTQWKRPSNMDVISET
ESDNQQRQIHQEAHRVFRSRRHISEDLENEHLEPRDMDNSWELITEEDSNDSLSQSLPGP
SSILTPQHPPTPVTREFAEDLNLRLSLTPDTNGEVPGPSSALSQLSNRLRSSSMTDGVSD
QAQAPPLTQSSQTRRTRAQTVSGGEEPMSPSATAYTLTTPGLPPGWEERKDAKGRTYYVN
HNNRTTTWTRPIVQLTEDGASTSAAAAASSGGASALAPASTPSSSSNASNNHLHEPQVRR
PRSLSSPTVTLSTPLEGANNIQVRRAVKDTFSNPQSPQPSPYSSPKSQHKAQQSFLPPGW
EMRIAPNGRPFFIDHNSRTTTWEDPRLKYPVHMRNKNSMEPGDLGPLPPGWEERVHTDGR
TFYIDHNTKNTQWEDPRLQSPAITGPAVPYSREFKQKYDYFRKKLKKPADIPNRFEMKLH
RNNIFEESYRRIMSLKRPDVLKARLWIEFESEKGLDYGGVAREWFFLLSKEMFNPYYGLF
EYSATDNYTLQINPNSGLCNEDHLSYFKFIGRVAGMAVFHGKLLDGFFIRPFYKMMLGKQ
ISLKDMESVDSEYYNSLKWILENDPTELDLRFCIDEDNFGQTYQVDLKPSGSDMVVTNEN
KKEYIDLVIQWRFVNRVQKQMNAFLEGFTELILIDLIKIFDENELELLMCGLGDVDVNDW
RQHTVYKNGYCPNHPVIQWFWKVVLLMDAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQ
LFTIEQWGTPDKLPRAHTCFNRLDLPTYESFEDLREKLLMAVENAQGFEGVD
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgaattacgagccaatatatggactttcagaagatgagcatgaaacaagagtg
ctgcgggttaaggtcattgcaggaattgatctggcgaagaaagacatcattggagccagt
gatccctatgtcaaactttccctctatgttgcggatgaaaacagagagcttgccttagtc
caaacaaaaactattaaaaagaccctaaatcccaaatggaacgaggagttctacttcaga
gtgtgtccgcagaatcacaggctactctttgaggtgtttgatgagaacagattggcttct
tccaagaatgggcttttccatctcggacagaccagagatgatttcctgggtcaagttgat
gttcctctcagtcatttgccgacagaggaccccgccatggagcgtccctacacatttaaa
gacttcctcttgcggcccagaagtcacaagtccagggtgaagggttacctgcgtctgaag
atggcctatctgcccaaacaaggaggacatgaggaggaggctggagaaatgagagaggag
gctgaggggtgggatgagtctgcagactcaggctcccagcggccacagcagctgctgccc
ccattgcccccaggctgggaagagaaggtggacaacctggggcgcacctattacgtcaac
cacaacaaccgttctacacagtggaaacggccctccaacatggatgtgatttcagagact
gagagcgacaatcaacagcggcagatccatcaggaagcacaccgtgttttccgttcgaga
cgccacatcagtgaagaccttgaaaacgagcacctggagcccagggacatggacaattcc
tgggagctcatcacagaggaagattctaacgacagcttgtcccagtctctgcctgggccc
tcctccatcttgacaccacagcacccaccgacacctgtcacccgggagtttgctgaagat
ttgaatctgaggttgtcgctcacgcccgataccaacggcgaagtgccggggcccagctcc
gctttgagccagttgtcaaacagactccgttcctccagcatgacagatggcgtcagtgat
caggcccaggctcctcctcttacgcagagttcccagaccagaagaacaagagctcaaaca
gtctcaggtggtgaggagcctatgtctccctcggcgactgcttacaccttgaccacccct
ggcctgccccctggatgggaggagaggaaggacgccaagggaagaacttattacgtcaac
cataacaaccgcaccacaacctggactaggccaattgtgcagctaactgaagacggagcc
agcacctcagcagcagcagcagcatcatcaggaggagcctcggccctggcacccgcatcc
accccttcctcctcttccaatgcctccaacaaccacctccatgagccccaagtccgacga
cctcgtagcctcagctcccctactgtcaccctttccacccccttggagggagccaacaat
atccaggtacggagggctgtgaaggacacattctccaacccccagtctccccagccgtcc
ccctacagctcccctaaatcacagcacaaggcacagcagagcttcctgcccccaggctgg
gagatgaggatagcccccaatggacgacctttcttcattgaccacaacagcagaacaacc
acctgggaggatcccaggttgaaatatccagtccatatgaggaataagaactcaatggag
cctggtgaccttggtcctcttcctcctggatgggaagaaagagttcacacagatggacgc
accttctacattgaccacaatacaaagaacacacagtgggaggaccctcgcctgcagagt
ccagccatcacaggacctgctgttccctactccagagagttcaagcagaaatatgactac
ttcaggaagaaattgaagaaacctgctgacatccccaaccgattcgagatgaagctgcat
aggaacaacatctttgaagagtcgtaccgtcgcatcatgtccctgaagaggccggatgtt
ctaaaggcacggctgtggatcgagtttgagtcagagaaagggttggactacggcggtgtg
gccagagagtggttcttccttttatctaaggaaatgttcaatccttactatggcctgttt
gagtactctgccacggacaactacactctccaaatcaatcccaactctggcttgtgcaac
gaggatcacctctcctatttcaagttcatcgggcgtgtggcaggaatggctgtgtttcat
ggaaaactactggatggttttttcatccgaccgttctacaagatgatgctgggaaaacag
atctctcttaaagacatggagtctgtggacagtgaatactacaactctcttaagtggatt
ctggagaatgatcccactgagctggacctgaggttttgtattgatgaggacaactttgga
cagacgtaccaggtcgacctgaagcccagcggctcagacatggtggtcaccaatgagaac
aaaaaagaatacatagacctggtcatccagtggaggtttgtcaatcgggtccagaagcag
atgaatgccttcttggagggattcactgagctcattctcatagatctgatcaagatcttt
gatgaaaacgaactggagctgctcatgtgtggtctgggtgatgtcgacgtcaatgactgg
agacaacacactgtttacaagaatggctactgccccaaccatcctgttatacagtggttc
tggaaggttgtcctgttgatggatgctgaaaagagaatccgactcctccagtttgttacg
ggaacgtctcgagtgccaatgaatggctttgctgagctttatggttctaatggtcctcag
ctgttcacaattgagcagtggggaacaccagataagttgccaagagctcacacatgtttc
aaccgcctggatctgccaacctacgaatcatttgaagacctgagagagaaactcctcatg
gctgtggagaacgcacagggcttcgagggggtcgactaa
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