Lates calcarifer (barramundi perch): 108874045
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Entry
108874045 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: macrophage mannose receptor 1
KO
K06560
mannose receptor, C type
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
108874045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lcf04131
]
108874045
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lcf04054
]
108874045
04090 CD molecules [BR:
lcf04090
]
108874045
04091 Lectins [BR:
lcf04091
]
108874045
Membrane trafficking [BR:
lcf04131
]
Endocytosis
Phagocytosis
C-lectin receptors
108874045
Pattern recognition receptors [BR:
lcf04054
]
Membrane-bound pattern recognition receptors
C-type lectin receptors
108874045
CD molecules [BR:
lcf04090
]
Proteins
108874045
Lectins [BR:
lcf04091
]
C-Type lectins
Group 6: Mannose receptor family
108874045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lectin_C
F5_F8_type_C
LCCL
UL45
Gal_Lectin
Chordopox_A33R
Rxt3
Motif
Other DBs
NCBI-GeneID:
108874045
NCBI-ProteinID:
XP_018517924
LinkDB
All DBs
Position
LG9:14327470..14347795
Genome browser
AA seq
2172 aa
AA seq
DB search
MDRRHRMFLQLLISAALLACANCQCQQGWREYENKCYFFSTDTKSWMEANAFCLEQNSNL
MSIQDIHERLWVRTQISTEIYWIGLNDQGVEGVWEWSDGSPFIEYLSYWGPGQPDNWGDE
PGEDCGQVMGSSYGQWNDENCGVKRKYICKHINPNPGPQCDLANGWRQYGSNCYKLKADT
RKSWAAARHDCVQEGGDLVSITSAGEEQYVTGTLDPSWIDLWIGLSTLKCNKISCQVEAG
NSQFTWSDALQVGYTNWANGEPTVDPQTGSCAAIIKDASEEFGKWRSHVCRYERPYMCKR
PLNTICPPGWLSFAGSCYWMVSNINLLTTWHEALTKCSDMGAHLLIINSQEEQFFINGNL
PDFHQVDIPDIWIGLSDKDQDGVFKWVDKTAVTFSNYGPGWPRNTANLWDCGQIFTGNYD
GKWETTNCFKSLGFVCEMTGGQNPKPTSAPDSHCDPGYLLYGDFCYHFETETVKNWQDAE
AHCTREQGHLASFHSQEELSFLTAHMPGEAWVGLNDINVENQFVYTDGTPADFLPWGPNQ
PDNWQDNEDCVHLRGMTHPEPGKLNDDFCTATKEYICKKAKGQGPPPQPPTSGPGWNEKC
GSWNADPFNDFCYLFNFLSTRTWAEARADCVNQGGDLVSISDPYEQAFIQGLIQASPVGI
SLWMGGHDSITEGGWEWTDGSPFRYIHWNAGNPDNYYGEDCLSILINNGYWNDDNCENKR
GYICKRRGNTPKPPPPHDGFMTAVVCQDSSAVLHCPHESVINIQSAFYGRKSDDICPHLD
GSGGGSCTVEGILPYFRKACDKRPFCFAYAHAEVDPCPTVSKYLEIVYSCEQKVCLHGLG
VEDRNITDSQLSASSSIGLFTPNRARLNGNSCWMPSGNPTSSWIQVNLGQTRKVTGIVIQ
GCPQNDHWLTKFKIQHSMDGTTWTDYTADGQFFPGSTDRNTPDTQLLGTPVSAQYVRILP
LEFSGQAGLRFDILGCTPDYAITCANKPNFNFANDRMTVHCPAGCANANYRVYGTSVYRG
DSNICAAAIHAGVVLNEIGGDCTLLKAAGQDFYPGSTRNGITSRQFDGNYAVSYTFADGE
LRCSGPDWYEFGEFCYKPFGDRKTWSDARDTCRGLGADLVSILSMTEQSWLESYLYMATS
DMWTGLNDLFVPGMFTWSDEHMVTFTYWAPGEPNNHDGFSEDCVEMLHQTGRWNDVSCTE
LNTYICKMPKAHYPLPSVKPTVYGCPQGWDAYGYSCYWMEETARSWSDAKAFCKEQDGFL
LHIGDIYEQSHFTVALAGKTGLWWIGLRAHGGTTGGVDYVWDNGSPLTFTHWDKDQPDNG
DGTCVAMTTGQIGGFWDDKQCSEKYAFVCEKPRPDITPPTKAPTPPPAQGCADGWTALPH
FRNCYKLFHNVDWSLKKSWGAAHEDCVARGANLVSIHNQEEEEFLSLYSKASSKWIGLKH
NPTDGGYSWSDGSPLSHTNWGHGEPNNHEGREECVEMVSSTNGTSSWWNDLNCDAHQDWI
CMIAKGKNPIVPPKPPPPLPAPDCGTNPGWRKNNNICYYYNDTDIVDFHTAMLRCYAEKA
RLVSILNKDEQAYVNSMVGTGQVAAAWIGMRMFGIASGQYMWVDHSPVTYTHWGPGEPNN
ANGEEQCVQMNRHQGGWNDANCGRAGAGYVCKKFPGDIHTPPPPTQPWEGNCPAGWMRFK
NKCFMFKGKKSDIKGNWSYARSWCKDQGGELAVIDDQYENDFVSSYLKDLELPTWIGLSD
LLVENQYAWSDGVSAVLYTNWNDKEPNNAGGAEHCVAMTHGPLVTGKWNDDACSKNHSFV
CYRKKSSSIAPPPPTKSPCRADYISWYQNCYKLVEEPATWDAAQAACKQQGGNLASIDMS
YDQAFVAGAVLQGKGDAWIGLRRKDDGSYMWTDGWPVFFTQWGPGEPSNIKDEGCVSMHA
SRFFHGTWNDTKCDQAKPYICKISSEKPPPTPAPGDGKCRHFWEPYGRYCYLVYNGKEGL
SWPDSRHYCQWERAELVSIHSRAEVEFIRNLNYTKYHNIWIGLTRDRNFGWGWTDKTSLG
FLNWAPGEPNEAFHPGDVAEENCVEMYPDGRWNDNNCLQKRGFACRHRQYYTTDDGGNPI
IPTDGPGGNHGGVIAGAVIAAMVVFILIVGLLYYVFTVRGYKLSSLSLPTRTTSNIDVPA
FTNPNFTGESDT
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atggacagaagacacagaatgtttctgcagttgctcatctctgctgctcttcttgcttgt
gccaactgtcagtgtcagcaaggctggagggagtatgagaacaaatgttacttcttttca
actgatacaaagtcatggatggaggctaatgcattttgtttggagcagaacagtaatctg
atgagcattcaggacattcatgagaggctgtgggtgagaacacaaatcagcacagagatc
tactggattggcctgaatgaccaaggtgtagaaggagtctgggaatggagcgatgggagt
ccttttatagaatatctgtcatactgggggccaggccagcctgataactggggcgatgaa
cctggggaggactgtggtcaggtgatgggatccagctatggacaatggaatgatgaaaac
tgcggggttaagaggaaatacatatgcaaacacatcaaccccaatcctggcccacagtgt
gacttagccaatgggtggcgacagtatggctccaactgctacaaactaaaggcagacaca
aggaagagctgggcagcagccagacatgactgtgtgcaggaaggaggagacctggtgtcc
attacctctgcaggagaagagcaatacgtcacaggaacattggacccatcatggattgac
ctctggattgggctttccacactgaaatgcaacaaaatttcctgtcaagttgaagcaggg
aacagccagtttacctggtctgatgctctgcaagttgggtacacaaactgggccaatggt
gaacccacagttgatccacagacgggctcatgtgctgcaataatcaaagatgcatcagaa
gaatttgggaaatggaggtcccatgtgtgcagatatgagcgtccttacatgtgtaaacga
ccactgaacaccatctgccctcctggctggttgagctttgcaggcagttgttattggatg
gtcagtaatatcaatctcttgaccacctggcatgaggccctcaccaagtgctctgacatg
ggagctcacttgctgattataaacagtcaagaagaacagttcttcatcaatgggaacctt
ccagattttcatcaagtggacattcctgacatctggattggtttatcagataaggaccag
gatggagttttcaaatgggtagataaaactgcagtcactttttctaactatggtcctggt
tggcccagaaacactgcaaatctctgggactgtggacagatcttcacaggaaattatgac
ggcaagtgggaaacgaccaactgcttcaagagcctgggtttcgtttgtgagatgacaggt
ggacagaatccaaaaccgacttcagcccctgattcccactgtgaccctggatatttgttg
tacggggacttctgctatcattttgagactgagacagtgaaaaactggcaagatgctgag
gctcactgtaccagagagcagggtcacctggccagcttccactcacaggaagagctgagt
ttcttgactgctcacatgccaggggaggcctgggtgggtttgaatgatatcaatgttgaa
aaccagtttgtatacaccgatggaactcctgcagacttccttccgtgggggcccaaccag
ccagataactggcaggataatgaggattgtgtgcacctcagagggatgactcaccctgaa
cctgggaaactcaatgatgatttctgcactgccacaaaggaatacatctgcaaaaaagcc
aagggacaaggacctccgccccagcccccaacatccggaccagggtggaatgagaaatgt
ggctcttggaatgctgacccttttaacgacttctgctacctgtttaacttcctgtcaacg
aggacgtgggcagaagctcgagctgactgcgtcaatcagggaggagacctcgtcagtatt
tctgatccctacgaacaggccttcatacagggtttgatccaggcgagtcctgtagggatc
tctctgtggatgggtggtcatgactccatcactgagggcggctgggagtggacagacggc
tctcctttcagatacattcactggaatgcaggtaacccagacaactattacggtgaagac
tgcctgtctatacttatcaacaatggctactggaatgatgacaactgtgagaacaaaaga
gggtacatctgcaagcggagaggaaacacacctaagcctcctccacctcatgatggtttc
atgacggctgtagtgtgccaggactcctctgctgtccttcactgtccacatgaaagtgta
attaacatccagtctgctttctatggccgaaagagtgatgacatctgtccacacctggat
ggatcaggaggaggaagctgcacagtggaaggtatcctcccttacttcagaaaggcgtgt
gacaagcgacccttctgctttgcgtatgcccatgcggaggtggacccctgtcccactgtt
tccaaatatctcgagatcgtctacagctgtgaacagaaagtgtgtctgcacgggctaggt
gttgaggatagaaacatcacagactcccagctctctgcttcctcctccatcggcctcttc
actcccaacagagcccgtttgaatggaaattcctgctggatgccttcaggaaacccaacc
tcaagctggatccaggtaaacctgggccagaccagaaaagtaacagggattgtaatccag
ggatgtcctcaaaatgaccactggctcactaagttcaagatccagcacagtatggacgga
acaacctggactgattacacagctgatggacaatttttcccaggctcaacagacagaaac
actcctgacactcagctgctgggtacacctgtgtcagctcagtatgtccgcattctcccg
ctggagttcagtggtcaggcaggccttcgctttgacatcttaggatgcacccctgactat
gcgattacatgcgctaacaagcccaacttcaactttgccaatgatcgaatgactgtccac
tgtccagcaggctgtgccaatgctaattacagagtgtatggcacttcagtatatcgtggg
gactcaaacatctgtgcagcagctatccatgctggagtggtactgaatgaaattggagga
gactgtactttgctgaaagctgcaggacaggacttttatcccggctctaccaggaacggc
atcacctcgagacaattcgatggaaactatgctgtgtcgtacacttttgcagatggggag
ctgaggtgttcagggcctgactggtatgagtttggagagttctgctacaaaccatttgga
gacagaaagacatggagtgacgcccgggacacctgcaggggtctaggtgctgatctcgtg
tccatcctctcgatgacggagcagagctggctggaaagctacctgtacatggccaccagt
gacatgtggactggtctgaacgacctgttcgtgcctggtatgttcacctggtctgacgaa
cacatggtgaccttcacctactgggctccaggggaacccaacaaccacgacgggttcagc
gaagactgtgttgagatgttacaccagactggccgatggaacgatgtgtcctgtacagag
ctcaatacctacatctgcaaaatgcccaaagctcattacccacttccctctgtaaaaccc
actgtgtacgggtgtcctcaggggtgggatgcatatggctactcctgctactggatggag
gagactgccaggagctggtcagatgctaaggccttctgtaaggagcaggacggcttcctg
ctgcacattggagacatttatgagcagtcacatttcacagtggcgttggcaggaaagacc
ggactgtggtggattggcctgcgtgcacatggagggacaactggaggggtggactacgtc
tgggacaacggttcacctcttaccttcactcactgggacaaagaccagccagataacggg
gatggtacctgcgtggcgatgacaacgggtcagattggtggtttctgggatgacaagcag
tgctcggagaaatacgcctttgtctgtgagaaacccaggcccgacatcaccccacccacc
aaagccccaactcctcctcctgcgcagggctgtgctgatggctggacagccctgcctcac
ttcaggaactgttacaagctcttccacaatgtggactggtccttgaagaagagctgggga
gcagcacatgaggactgtgttgccagaggtgcgaatctggtcagcatccacaatcaggag
gaggaggagttcctgtctctgtacagcaaagccagcagcaagtggattggcctcaagcac
aacccaacagacggaggctattcttggagtgatggctcgcctctgtcccacactaactgg
ggtcacggggagcccaacaaccacgagggccgcgaggagtgtgtggagatggtgagcagc
accaacgggacgtcctcctggtggaacgatctcaactgtgacgctcaccaggactggata
tgcatgatcgctaaaggaaagaaccccatcgtgcccccaaagcccccacctcctctccca
gctcctgactgtggaaccaaccccggctggaggaagaacaacaacatctgttactactac
aatgacactgacatagtggacttccacacggccatgctgcgctgttatgctgagaaggcc
agacttgtctccatcctcaacaaagatgaacaggcatatgttaacagcatggtggggaca
gggcaggttgctgcagcctggatcggaatgaggatgtttggcattgcaagtggacaatac
atgtgggtggaccattcccctgtgacatacactcactggggtccaggtgagcccaacaat
gccaacggggaggaacagtgtgttcagatgaacagacatcaaggtggatggaacgatgcc
aactgtggtcgagctggagcaggctatgtctgcaagaagttccctggagacatccacacc
cctccaccacccacacagccctgggagggcaactgccctgcaggttggatgcgtttcaag
aataagtgcttcatgttcaaagggaagaaaagtgatattaaaggcaactggtcttacgct
cgcagttggtgcaaagaccaaggaggagagttggcagttattgatgaccaatatgagaac
gactttgtgtctagttacctgaaggacctggagctccccacgtggatcggtctgtcagat
ctgttggtagagaatcagtacgcctggagcgatggggtcagcgcagtgctgtacaccaac
tggaacgacaaggagcccaacaacgcaggaggagcggaacattgtgtggcaatgacccac
ggcccgctggtgactggcaagtggaacgatgacgcttgtagcaagaatcatagcttcgtc
tgctacaggaagaaatcaagcagcatcgcccctccacccccaaccaagagcccctgtcgg
gctgactacatctcctggtaccagaactgctacaagctggtggaggagccggcgacctgg
gacgcagcccaggcggcctgcaagcagcaggggggcaacctggccagcatcgacatgagc
tacgaccaggccttcgtcgcgggagcggtgctgcagggcaaaggtgacgcctggatcggg
ctcaggcgcaaggatgatggctcctacatgtggacagatggctggccagttttcttcact
cagtggggaccaggagagcccagcaacatcaaggacgaaggctgcgtgagtatgcacgcc
tcacgttttttccacgggacctggaatgacaccaagtgtgaccaagcgaaaccttacatc
tgcaagatctcctcagagaaaccgccaccgacccccgcccctggtgatgggaaatgtcgg
catttctgggagccctacggccgctactgttacttggtgtacaacggtaaggagggcctc
tcctggccggactcccgacactactgccagtgggagagagcagagctggtgtccatccac
agcagagcggaggtggagttcatcaggaacctcaactacaccaaatatcacaacatctgg
atcggactcaccagagaccgtaactttggctggggctggacagataaaacgtctctgggc
ttcctgaactgggctcccggtgagcctaatgaagcctttcacccaggggacgtggccgag
gagaactgtgtggagatgtatcccgatggacgctggaatgacaacaactgcctgcagaag
agaggtttcgcctgccgccaccgccagtactacacaacagatgatggcggtaatcccatt
atccccacagatggtccaggtggcaaccatggaggggtgatagctggtgctgtcatcgca
gccatggtggttttcatcctgatagttggactgctgtactatgtcttcactgtcaggggt
tacaaactgagcagcctgagcctgccaacaagaacaaccagtaacatcgatgtgcctgct
ttcaccaaccctaacttcacaggagaatcagacacataa
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integrated database retrieval system
