Lates calcarifer (barramundi perch): 108875750
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Entry
108875750 CDS
T04895
Name
(RefSeq) basement membrane-specific heparan sulfate proteoglycan core protein
KO
K06781
cell adhesion molecule 1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
108875750
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lcf04515
]
108875750
Cell adhesion molecules [BR:
lcf04515
]
Immunoglobulin superfamily
Necl family
108875750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_2
Ig_3
I-set
ig
C1-set
Adhes-Ig_like
ICAM_N
Hap4_Hap_bind
Motif
Other DBs
NCBI-GeneID:
108875750
NCBI-ProteinID:
XP_018520379
LinkDB
All DBs
Position
Unknown
AA seq
351 aa
AA seq
DB search
MFFILLVFSLMSFLCDFHVSSCDENCADKPVFTPSRLVVKHGDPTSATCSVKNVYDIFNL
EKSLGDLKTNGTEILWKVEKMTEWDMFVMCYYELADHQCCSTLPITVYKPPDNVPISFRN
HSGPLLEGHQYTLQCEVHNVAPVENLTVTFYRGQTALGQLQSNNTEKKPVTEIFTLNINT
SKEDDGVQYWCVAELELGPEGPQPPIVLSSHQRIRATVLYKPQLLVPPHPDRITITEGSP
LQLNCTAVGNPSPSYTWVLPPSSLLPSNSNVLTIKSVASEHGGQYTCEVSNKVGNVTVMF
HVDVEGLELTSTKLPPITTTSMTTTTPNSSTSSTLIHRFIMCFMLLFSVVV
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgtttttcatcctcctggtgttttctttgatgagttttctatgcgacttccatgtctcc
agttgtgatgaaaactgtgcagataaacctgtgttcacaccgtccagactggtagtgaaa
catggtgacccaacctctgccacctgctctgtaaaaaatgtttatgatatttttaatttg
gaaaaatctctgggagaccttaaaacaaatggaacagaaattttatggaaggttgaaaaa
atgactgaatgggacatgtttgtcatgtgctattatgaacttgctgatcaccagtgttgc
agcacgctgcctataactgtgtacaagcctccagacaatgtgcccatcagctttaggaat
cactctggaccgttgttagagggtcatcagtacactctgcagtgtgaagtacacaacgtt
gctcctgttgaaaacctcactgtgaccttctacagaggacagacagcactgggtcaacta
cagtccaacaacacagagaagaaaccagtgactgagatcttcactctgaacatcaacacc
agtaaagaggatgatggagtccagtactggtgtgtagccgaactggaactgggacctgaa
ggaccacagccccctatagtgctgtcatcacatcaacgtatccgtgccactgtcctctat
aagcctcagctactggtcccaccacatccagatcggatcaccatcacagaaggaagccct
ctacagctgaactgtacagctgttggaaaccccagcccctcgtacacctgggtgctccca
ccatccagcctcctgccctccaacagcaatgttctcaccatcaaatctgtagcttctgag
cacgggggccagtacacctgtgaagtcagtaacaaagtcgggaatgttactgtgatgttt
cacgtggatgtcgaaggtttggagttaacctcaaccaaactgccaccaataactacaacc
tcaatgacaacaaccacaccaaacagcagcaccagcagcacactgattcataggttcata
atgtgttttatgcttttattctctgttgtggtttga
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