Lates calcarifer (barramundi perch): 108878637
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Entry
108878637 CDS
T04895
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a isoform X4
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108878637 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
108878637 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
lcf04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108878637 (pdlim5a)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108878637
NCBI-ProteinID:
XP_018525058
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Position
LG13:8765651..8821174
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AA seq
574 aa
AA seq
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MSSNYSVTLSGPAPWGFRLQGGKDFNMPLTISRLTDGGKAAKSGIAVGDLVLSIDGIATE
GMNHLEAQNKIKSCADNLSLTLQKAPSVPKPPPVAPKDDRSDIIKPVALTHPPPPPHPHP
HSSSPSTTPYNKAPRPFGGYGSESEYPPSQSPFAAFIPSPSSAFTPASSHTSPFPPPPPP
VSYPSSSSSSSSPSVLVPPQPSVYNTPINLYSTENACEVAMGQRRGLLESQGGALPLQFN
GAPRKHVVDTDIHFYHVPTHADASRKRIMEDTEDWRPRTGTTQSRSFKILAQITGTENVQ
EEEADKAKKTNEDSEEPELNSHESAVVKTMIKGPAATRGHGPQSGLIIPSFGMKGNGSAS
VPRGPVPSRPAPQPHPKDEDTLVQMAEHIPAGTRTPMCAHCNMVIRGPFLVAMGKSWHKE
EFNCAHCRTSLADIGFVEEQGCVYCEHCYEDFFAPTCSRCQAKILGEVINALKQTWHVYC
FLCACCQQPIRNNTFHLEDGEPYCEQDFYSLFGTGCHGCEFPIEAGDKFLEALGYTWHDT
CFVCAVCCTTLEGQTFFSKKDKPLCKKHAHTLKI
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaactacagtgtcactctctcaggccctgccccctggggtttcaggctgcaa
ggagggaaggacttcaatatgcccctcactatctctaggctgacggatggtgggaaggca
gctaaaagtggtattgctgtcggagacctggttttgtccatcgacggcatcgccacagag
ggcatgaaccacctggaggcccagaacaagatcaagagctgcgctgacaacctcagcctt
accctgcagaaggctcccagtgttcccaaacctcctcctgtggcaccaaaggacgacaga
tcagacatcataaaaccagtggccctcacccacccccctcctccaccccatccccacccc
cactcctccagcccctccaccaccccctacaataaagcccccagacctttcgggggctac
ggatcagagagtgaataccctccgtcacagtcgccgtttgctgccttcatcccatcccca
tcctctgccttcacccctgcctcctcccacaccagtcctttccctcctcctccacctcct
gtctcttacccatcctcctcctcctcctcctcctccccctccgtccttgtcccgcctcag
ccgtcagtgtataacacaccaatcaacctatactccactgagaatgcctgtgaggtggcc
atggggcagaggcggggcctgttggagagtcagggtggagccttgccactgcagtttaat
ggagctcccaggaaacacgttgtggacacagacatccatttttaccatgtgcccactcat
gctgatgccagcaggaagcgcataatggaggacacagaggactggcgcccacgcaccggc
accacccagtccagatccttcaagattctggctcagatcactggcaccgagaatgttcaa
gaagaggaagctgacaaagccaagaagacaaatgaggacagcgaggagcctgaacttaac
agccatgagtctgcagttgtcaagaccatgatcaaaggacctgctgcaactcggggtcac
ggcccacagagtggtttgatcattccgtctttcggtatgaaaggtaacggcagtgctagt
gtcccgaggggtcctgtcccatcccgacctgcacctcagccccaccctaaagatgaggac
accctggtccagatggcagaacacatccctgctgggactcgtacaccgatgtgtgcccac
tgcaacatggtcatcagggggccctttttagtagcaatgggtaaatcatggcataaggaa
gaatttaactgtgcccactgccgtacatccctggcagacataggctttgtggaggaacag
ggatgtgtctactgtgaacactgctatgaagatttcttcgctccaacatgcagccgctgc
caggccaagatactgggggaggtgataaatgccctcaaacagacgtggcatgtgtactgc
tttctgtgcgcttgctgtcaacagccaatcagaaacaacaccttccatctggaggatgga
gaaccatactgtgaacaagacttctacagtttgtttgggactggctgccatggctgtgaa
ttccccatagaggcgggagacaagttccttgaggcccttggttacacctggcatgacacc
tgctttgtttgtgctgtgtgttgtaccacactggaaggccagaccttcttctccaagaaa
gacaaacccctttgcaagaaacatgctcacacactgaagatatga
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