Lates calcarifer (barramundi perch): 108879076
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Entry
108879076 CDS
T04895
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 24 isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lcf01002
]
108879076
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108879076
Enzymes [BR:
lcf01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108879076
Peptidases and inhibitors [BR:
lcf01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
108879076
Ubiquitin system [BR:
lcf04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
108879076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
DUF3517
UBA
Motif
Other DBs
NCBI-GeneID:
108879076
NCBI-ProteinID:
XP_018525738
LinkDB
All DBs
Position
LG17:complement(6836822..6868233)
Genome browser
AA seq
2625 aa
AA seq
DB search
METEEEQHITTLLCMGFPDPDVIRKALRLAKNDINEAVALLTNESPGLGYGYEPMESGPA
PGLGSSGDGENSGRTGTGGFDPPPAYHDVVDSERSNDENGNCSGGSMEFPTTNLYELESR
VFTDHWSIPYKREESLGKCLIASTCLARHGLADADENCKRFMDRCMPEAFKKLLTSSAVH
KWGTEIHEGIYNMLMLLVELVAERVKQDPVPVNLMGVLTMAFNPDNEYHFKNRMKACQRN
WAEVFGEEANMFAVSPSNTYQKEPHGWLVDLVNRFGELGGFTAIQTKLNTEEIEIACVSA
LVQPLGVCAEYLNSSLVQPMLDPVIHKMITYVQNLEEKDLKDKRLVSIPDLLSAIKLLCM
RFQRELVAVVDDLRLDTLLRMLKTPHFSTKMNSLKEVTKLIEESTVSKTVKNAIDTDKLL
DWLVENSVLSIALEGNIDQAQYCERIKGIIELLGSKLSLDELSKIWRIQAGQSSTVIENI
HTIIAAAAVKFSFDQLTHLFVLIQKSWEVESDRVRQKLLSLIGRIGREARSETTTGKVLE
VLWELAHLPTLPTSLVQQALEEHLGILSDAYAVKETVKRSYIIKCIEDIKKTHTQEDNKG
SDTQSSFLTGTWGKKKANSLAKASQQSSPQAVWVVPALRQLHEITRSFIKQTYQKQDKSI
IQDLKKNFEIVKLITGSLVCCHRLAVTASGNNGLSGSTLVDGRYTYQEYLDSHLRFLAFF
LQEASLYLVWNRAKELWECLVSGPDVCELDREMCFEWFTKGQHDLESDVQQQLFKEKILK
LEPYEITMNGFNLFKTFFENVNLCDHRLKRQGTQLCVERLDLAGMDFIWRIAMETPDEEI
ANEAIQLIITYSYTNLNPKMKKDSVSLHKKFIADCYKRLEAASSALGGPTLTHAVTRATK
MLTATAMPTVATSVQSPSRYRGGFGSTKLVIIERLLLLAERYVITIEDMYSVPRTILPHG
ASFNGHPVTLHITYESTKDTFTLETHSNETIGSIRWKISEHLSCPVDNVQIFANDSVLTM
NRDQKLLSQLGFSDEQSLTVKSSGTGTPSGSSESSASASSSSSSAVFNSAYALEQEKSLP
GVVMALVCNVFEMLYQLANLDESRITIRVRKLLLLIPTDPEVQDALDNFVPKESSVWSHQ
KTLFTLGQGTGSRSPSMASKQQHQPSAASILESLFRSSAPGMSTFRVLYNLEVLSSKLMP
TSDDEMAKTSSKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLL
VGQSMPAALDDDVIRDGEALSSRPFRNAGRTGRQLSLCGTPEKSSYRQMSLSERSSIRVE
EIIPAARVAIQTMEVGDFTSTVACFMRLTWAAAAGRLDLVGSPQPIRETHSSLLPQGVRT
RVSSTGSNCSSSSEGESMPTALHAGICVRQQSVSIKDAIIAREALSLLVTCLQLRCQQLC
SFYNLPSVNDFIIDILLGSPSGEIRRVACDQLYTLSQSDTSAFLEVQKPNLFLLSVILTA
QLPLWSPTSVMRGVNQRLLSQCTEYFDLRCQLLDDLTTSEMEALKVSAATMLEDEISWLD
NFEPSWSSEMETSQADNILLAGHLRLIKTLLSLCGNEKEHLGPSLIQQLLDDFLFRASRI
IINSSNPTPSPALSHDFHPKCSTASSRLAAYEVLVMLADSSLSNLRLITKELLSMHHQSD
PSLCKEFDYLPPVESRSVSGFVGLKNGGATCYMNAVFQQLYMQPGLPEAFLSIEDDTDQP
EESVFYQVQSLFGHLMESKLQYYVPENFWKIFKMWNKELYVREQQDAYEFFTSLVDQLDE
HLKKMGREQIFKNTFQGIFSDQKICKDCPHRYEREETFMALNLGVTSCQSLEISLDQFVR
GEVLEGSNAYYCEKCKEKRTTVKRTCIKSLPSVLCIHLMRFGFDWESGRSIKYDEQIRFP
WVLNMEPYTVSGMARQDCSGEGGEGRGDGTSGGSPRKKVTISENYELVGVVVHSGQAHAG
HYYSFIKDRRARGRWYKFNDNVVEEFDMNDETLEYECFGGEYRPKVYDQSNPYPDVRRRY
WNAYMLFYQKISDQNSPVLPKKSRVSIMRQEAEDLTLSAPSSPDVSPQSSPRPPRANNDR
LTLLTRLVRKGEKKGLFVEKMPASIYQMVRDENLKFMRNRDVYNSDYFNFTLSLASVNAT
KLKHPDYQPMAKESLQLAVHFLFHTYLHTKKKLRVDTEEWMATVEVLLSKSSEACQWMVQ
YLVGPEGREITRVCLLECSVREVRLVVASILEKTLESALHFGDPGLDSLTDALLSLLDKD
VPENVKNCAQYFSLFSNFAQRGCGPCQLLLKHSAYRRMLIFLLGPNRQNNQNRRWSPAQA
REFLHLHSTLALITLHSDLSPQRTQAPGGFKLRVSNVPSSTPLLPLHVDILTSLFTPEGQ
PYLLEVMFAMRELSGPLSLLIEMVTYCSYCNEPFSQGVLQLLKTQLETAPPHELKNIFQM
LQELLVVEDPLQSQRLKYAFESEKGLLALMHQSNNMDSRRCYQCVKFLVTLAQKCPPAKD
YFKDLSGHWSWAVQWLQKKMTEHYWTPQSNVSNETSTNKTFQRTISAQDTLAYATALLNE
KEQSGSSNGSDGSPANENADRSLRQGSESPMMLGDSKSDLEDVDP
NT seq
7878 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgaagaggagcagcacataacgacgctcctctgcatgggtttcccagacccc
gacgtgatacggaaggctctccgcctggcaaagaacgacatcaacgaggcagtggcgctc
ctgacgaacgaaagccccggactcgggtatggatacgagccgatggagagtgggcctgct
cccggcttgggttcgagcggagacggggaaaatagcgggcgtactgggacgggagggttt
gaccccccgcccgcataccacgatgtggtggatagcgagaggagcaacgatgagaatggg
aactgctctgggggaagcatggagttccccaccaccaacctgtatgagctggagagtcga
gtctttactgatcactggtcgataccttacaagagagaggagtctctgggcaagtgcctc
attgcgtccacctgcctcgccagacacggccttgctgacgctgatgagaactgcaagcgg
tttatggatcgctgcatgccggaggcctttaaaaagttgctgacgagtagcgcagtacac
aaatggggcacagagattcacgagggcatctacaacatgctcatgttgctggtggaactg
gttgcagagagggtcaagcaagaccctgtacctgtaaacctaatgggagtcctgactatg
gccttcaaccctgataatgagtaccattttaagaatcgaatgaaggcctgtcaaaggaac
tgggctgaagtttttggagaagaggccaacatgtttgctgtgtcccccagcaacacctat
cagaaagagcctcatggttggctggttgatttggtgaatcgatttggggagttgggagga
ttcactgccatccagaccaagctcaacactgaggaaattgagattgcatgtgtttcagct
ctggtccagcctcttggagtttgtgcagaatacctcaactccagcctcgtccagcccatg
cttgatccggtcatccacaagatgatcacatatgtacagaacctggaggaaaaggatctt
aaagacaagcgtctggtaagcatcccagacctgctgtcggccatcaagctgttgtgtatg
aggttccagagggaactggttgctgtggtggacgatctgcggctagacacactgctgcgt
atgctcaaaaccccccatttctccaccaagatgaactctctcaaagaggtgacgaagtta
atagaagagagcacggtgtctaagacagtgaaaaacgccattgacacggataaattactt
gactggcttgtagagaattcagtcctgtcaatagcactggagggtaacattgatcaagct
cagtactgtgagaggattaagggaatcattgagctgctggggagtaagctgtcactggat
gaactctctaagatctggagaatacaggcaggccaatcatcaactgtgatagaaaacatt
catacaatcattgctgctgctgctgtgaagttcagttttgatcagctcacccacctcttt
gtgctcatacaaaagagctgggaggttgagagtgaccgtgtgaggcagaaactgctcagt
ctgatcgggaggataggcagagaagctcgttctgaaactacaactggaaaggtgctggag
gtgctgtgggagttggctcatctccccaccctgcctaccagtctagttcagcaggcgttg
gaggagcacctggggatcctgagcgatgcctacgctgtcaaggagacggtgaaacgcagt
tacatcattaaatgtattgaggacatcaagaagactcacactcaggaggacaataaaggc
agcgacactcaaagctcatttcttactggcacttggggcaagaagaaagccaactctttg
gccaaagcttcacagcaaagcagtcctcaggcagtttgggttgttcccgctctccgtcag
ctgcacgagatcacccgttctttcatcaagcagacctatcaaaaacaagacaagagcatc
atccaggatctgaagaagaactttgagatcgtcaaactgatcacaggatcccttgtgtgc
tgccatcgactcgctgtgactgcatcgggaaataatggactctcaggctcaaccctggtg
gatggacgatacacctaccaggagtatctggacagccacctgcgcttcctggccttcttc
ctccaggaggccagcctctacctggtctggaacagggccaaagagctctgggagtgtctg
gtgtcagggccggatgtctgtgaacttgaccgtgagatgtgttttgagtggttcaccaaa
ggacaacatgacctggagagtgatgttcagcagcagctcttcaaggagaaaatcctaaaa
cttgagccctatgagatcactatgaatggttttaatctgtttaagaccttctttgagaat
gttaatctgtgtgatcatcgcctgaaacgccaaggaactcagctgtgtgtggagcgcctt
gacctggcagggatggattttatctggcgcatcgccatggaaacccctgatgaagagata
gccaatgaagcaatccagctcattatcacatacagctacaccaacctcaatcccaagatg
aagaaggattctgtatctttgcacaagaagttcattgctgattgttacaagagactagag
gcagcaagttcggccctgggtgggcctactttgacacatgctgttactagggcaaccaag
atgctgacggctaccgcaatgccgactgtggccacatctgtacaatcaccatccaggtac
agaggggggtttggatccactaagctggtaataattgaaagactgctgctactggctgaa
cgctacgtcattactatagaggacatgtactcagttcctcgcactattctacctcatggg
gcctcattcaatggacaccctgtcactcttcacatcacctatgagtcaaccaaagacact
ttcaccttagagacccacagtaatgagacaataggaagtatccggtggaagatatctgag
cacttgagctgtccagtggataatgtccagatctttgccaatgatagcgtgttgaccatg
aatcgagaccagaagctgctgtcccagcttggctttagtgatgagcagagcctaactgtg
aagagctcaggcactggcactccttctggcagctcagagtcctcagcctccgcctctagc
agttccagctccgccgtcttcaactctgcctatgccttggagcaggagaagtccctgcct
ggtgtggtcatggctttggtgtgtaatgtgtttgagatgctttaccaactggctaacctt
gatgaatctaggatcaccatccgtgtgaggaagctgctgctgctgatcccaacagaccca
gaagtgcaggatgctctcgacaactttgttcccaaagaatccagtgtctggagccaccag
aagacgctgttcaccctcggccagggcacaggctctcggtctccatctatggcctccaag
cagcagcaccagcccagtgctgcatccatcttggagtccctattcagatcctcagcacct
ggcatgtccaccttcagagtgctatacaatcttgaggtgttgagttcaaagctcatgccc
acatctgatgatgagatggccaaaaccagcagcaagtccttctgtgagaacttcctcaaa
gcaggaggtctcagtttggtggtgaatgttatgcagagggattccatcccatcagaggtg
gactacgagaccagacaaggagtctattcaatctgtcttcagttggccaggttccttctg
gttggtcagagcatgcctgcagcactagatgatgatgtcatcagagatggtgaggcgctg
tcctcccgtccatttcgcaatgctggaaggaccgggcggcagctgtctctctgtggaact
ccagagaagtcgtcctacagacagatgtccttgtctgagcgctcatccataagagtggaa
gagatcataccggctgctcgtgtagctattcagaccatggaggtgggagacttcacctcc
actgtggcctgtttcatgcgtctgacctgggcggctgcagcaggccgattggatctggtt
ggcagtccacagccaatcagagagacccacagttcacttctgccacagggagtccgcacc
agagtcagcagtacaggaagtaactgcagctctagcagtgagggcgagagcatgccaaca
gcgttgcatgcagggatatgtgtcagacagcagagtgtctccatcaaagatgccatcatc
gcccgtgaggccctgtcactgctggttacctgtctgcagttacgctgtcagcagctatgt
tctttttacaatcttccctctgtcaatgatttcattattgatattctgctgggatctccc
agcggagagattcgccgtgtggcttgtgatcagctgtatactctgagccagtctgacact
tcagccttccttgaagtccagaaacccaacttgttcctcctctcagtcattctcaccgct
cagctgccactatggagtcccacatctgttatgagaggagtcaaccagaggttgctgtcc
cagtgcactgagtactttgacctaagatgtcagcttctggatgacctaaccacgtcagag
atggaggcgttaaaagtgagtgcagcgaccatgctggaggacgagatctcttggctcgac
aattttgagcccagctggagctctgagatggagaccagccaggcggataacatcctcctg
gctggacatctccgactcatcaagaccttactctcactctgtggcaacgagaaggaacat
ctcggtccatctctgatccagcagttgttggatgacttcctgtttcgagcctcacgcatc
atcatcaacagttccaaccccacaccttccccggccctcagccatgacttccatcccaag
tgcagcacagccagcagcagactggcagcctacgaggtgcttgtgatgctggcagacagc
tctctctcaaacctccgactcatcaccaaggagttactgtccatgcatcaccagtctgat
ccttccctctgcaaggagtttgattatctacccccagtagagagccggtcagtctcaggt
tttgttgggctgaagaatggaggagccacatgttacatgaatgctgtgttccagcagctc
tacatgcagcctggcctgccagaggctttcctgtccattgaggatgacacagaccagcca
gaggagagcgtcttctaccaggtccagtctctatttggacatctgatggagagcaaactg
cagtactatgtacctgagaatttctggaagatcttcaagatgtggaacaaggagttgtat
gtaagagaacagcaggatgcttatgagttcttcacaagccttgtcgaccagcttgacgaa
catctcaagaaaatgggtcgagaacagatcttcaaaaacacatttcagggaatcttctct
gaccagaagatttgtaaagactgtcctcacaggtatgagcgtgaagaaacattcatggca
ttgaaccttggagtgacttcttgtcaaagtctggagatctcattagaccagtttgtcaga
ggagaggtgctggagggcagcaacgcctactactgtgagaaatgcaaggagaagagaacc
acagtgaagaggacgtgtatcaaatccctgcccagtgttctctgtattcatctcatgcgc
ttcggcttcgactgggaaagcggacgctccatcaaatatgatgaacagattaggttcccc
tgggtgctgaacatggagccctacactgtctctggaatggctcgtcaagactgtagcgga
gagggcggcgaggggcgaggggatgggacatcaggagggtcacccaggaagaaggtcaca
atttctgagaactacgaacttgtgggagttgttgtccacagtggtcaggcacatgccgga
cactactactccttcattaaagacaggcgtgcccggggacgttggtacaagttcaatgac
aatgtggtggaggagtttgatatgaatgatgagactctggagtacgagtgctttggggga
gagtatcgccccaaagtctatgaccagtccaacccatacccagatgtgcggaggagatac
tggaacgcctacatgttgttctatcagaagatcagcgatcagaactcacctgtcctgccc
aagaaaagtagagtcagcattatgagacaggaagctgaggaccttactctgtcagccccg
tcctctcctgatgtttccccacagtcctctccccgccccccacgtgccaacaacgaccgt
ctcaccctcctcacccgccttgtccgcaagggagagaagaaagggctgtttgtagagaag
atgcctgccagcatctaccagatggtgcgagatgagaatctcaagttcatgaggaacagg
gacgtctacaacagtgactacttcaacttcaccctctctctagcctccgtcaatgcaact
aaactgaagcatccagactaccagcctatggccaaagagagtctccaactggctgttcac
tttctcttccacacctacctacacaccaaaaagaaactccgggtggacacagaggagtgg
atggctacagtagaggttttgctgtctaaaagcagtgaggcatgtcagtggatggtgcag
tacttggtcggaccagagggacgggagatcaccagagtttgtctgttggagtgcagcgtg
agggaggtgaggctggtggttgcgtccatcctcgaaaagaccctggagagcgcgctacac
tttggtgacccaggattggacagtttgaccgacgccctgctctccttactggacaaagat
gttcctgagaatgtgaaaaactgtgcacagtacttcagcctcttcagtaactttgctcag
aggggttgcggtccctgtcagttgttgttgaaacactcagcttatcgccggatgctcatc
ttcctgttgggacccaataggcagaataatcagaatcggcggtggagtccagctcaggct
cgggagttccttcacctccacagcactctggccctcatcactctccactctgacctcagc
ccacagcggacgcaagctccaggaggatttaagctgcgtgtgagtaacgtcccatcctct
accccactcctccccctccatgtggatatcctgacctcactcttcaccccagagggacag
ccttaccttctagaggtgatgtttgccatgcgtgagctgtcaggcccgctatctctcctg
atagagatggtgacctactgctcgtactgtaatgagcccttctcccagggtgtgctgcag
ctactcaagacccagctggagacggctccacctcatgaactgaagaacatttttcagatg
ctgcaggagctattagttgtggaagaccctctgcaatcccagagactcaagtatgctttt
gagtcagagaaaggcctgttggccttgatgcaccagagcaacaacatggacagcagacgc
tgctaccagtgtgtgaagttcctggtcacattagcccagaagtgtcctccagccaaggat
tactttaaggacttgtctggtcactggagctgggcagtacagtggctacaaaaaaagatg
acagagcattactggactccacaaagcaacgtctccaatgagacatccaccaacaaaacc
ttccagcgcactatctctgcacaggataccttggcctacgccacagcgttgttaaacgag
aaggagcagtctggcagcagtaacggctctgacggcagtccagcaaatgaaaacgccgac
cgcagcctccgacaggggtccgagtctcccatgatgctgggcgattcgaagagtgatcta
gaagacgttgacccctag
DBGET
integrated database retrieval system