Lates calcarifer (barramundi perch): 108879646
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Entry
108879646 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent calcium channel subunit alpha-2/delta-1a
KO
K04858
voltage-dependent calcium channel alpha-2/delta-1
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf04010
MAPK signaling pathway
lcf04260
Cardiac muscle contraction
lcf04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108879646
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
108879646
04261 Adrenergic signaling in cardiomyocytes
108879646
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lcf04040
]
108879646
Ion channels [BR:
lcf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
108879646
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Gene cluster
GFIT
Motif
Pfam:
VGCC_alpha2
VWA_N
VWA
dCache_1
VWA_2
Cache_3-Cache_2
Motif
Other DBs
NCBI-GeneID:
108879646
NCBI-ProteinID:
XP_050933549
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Position
LG18:7419396..7502364
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AA seq
1079 aa
AA seq
DB search
MDYSVCLLLLLSSISSVTTEQFPAAPMIKEWVDQMQKELITLTDTASGLQDLIQIYKTHK
AHFSVESNNARELVATAAGNIERLLANRSKALERLATEAERFQMDHEWREDSEADKIVYY
NAKDDLNQTSEPEKKNRYVPDDFHIDADFKRLVSYNTTAVHIPTDIYERSTIILNELNWT
EALEEVFRKNKEEDPSLLWQVFGSATGLARYYPASPWIDLSNSANKIDLYDVRRRPWYIQ
GAASPKDMLILVDASGSVSGLTLKLIRTSVSTMLDTLSDDDYVNVVYFNEKALSAACFQN
LVQANVRNKRILKDAVQNIIAKGVTRYQDGFKLAFKQLAQMDVARANCNKIIMLFTDGGE
ERAEEIFKEHNPKQEVRIFTFSVGQHNYDKGPIQWMACTNKGYYYEIPSIGAIRINTQEY
LDVLGRPMVKAXPKKAKQVQWTNVYLDALELGLVITGTLPVFNKTSTGSKKSQNQLILGV
MAIDVSLEDIKRLTPRFTFGPNGYYFAIDPNGYVLLHPNLQPLTAKFDEPVTLDFLDAEI
ENEIKETIREEMINASTGNYTIFTLVKSQDERYMDQGWRTYTFAPVKGSDYSLALVLPEY
SMHYIRATIGDTITQAKFSESLLADKFDEYGYTFIAPRVYCKDLKPPNKNKNNTEFLMEF
NNYIDTKTPNNPMCNVELVNRLLLDAGITSDLIKLWKQNELQPGVSARFVATDGGITRVY
PKSAGFYWKEEAETYESSFYKRSLDNDLYIFTPTPYPNKENTTDDSILVSRAVNLNIDGI
NLKPAVVGVKLDISAWMARFINATVKTNCNGEMCGCQRNDAYVDCIILDDGGFLVMSNQD
KYIDQIGSFFGVIDPTLMRKLNDSLFTLKQTYDYQSLCDPKKESKAAAGPRSVYVPTIAD
ILNLGWWATAAAWSLLQQILVSITFPSFMDAAEMDDEVSDAMLKEVCITKQTQYYFMNNN
LSFRGTIDCENCSRLYHAEKLPKTNLVFIITDAKLTCLPCDATLLKQEEEQSEGPDPCEL
AKKPRYRKGPSECFDNNEHEDDADCGGASSLSPSLWLMVALQLVLLWVLTGSRNYAVSS
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atggattactcagtctgcctacttttactcctgtcatccatttcgtctgtaaccaccgaa
caattcccagcagcgccgatgataaaggaatgggtggaccagatgcaaaaagagttgatc
acattaacagacacagccagtggtcttcaggacctaatacagatctataaaacacacaaa
gctcacttcagtgtggagtccaacaatgcaagggaactggtggcaaccgctgctgggaac
atagagaggctgctggcaaaccgctccaaggccctagagaggctggcaacagaagcagaa
aggtttcagatggaccacgagtggagggaagacagcgaggccgacaaaattgtttactac
aatgccaaagatgatcttaatcagactagcgaacctgagaagaagaaccgatatgttccc
gatgatttccacatagatgcagacttcaaacgactggtctcttacaacaccaccgctgtc
cacatccctacggatatatatgaacgctctaccatcattttgaacgagctaaattggaca
gaagccttggaggaagttttccggaaaaacaaagaggaagatccctcactcctctggcag
gtgtttggttctgccactggactggctcggtactacccagcatccccttggatcgacttg
agcaattcagccaataagatcgacctctacgatgtgcgcagacgaccatggtacattcag
ggggcggcgtctcctaaggacatgctgatcctggtggatgcgagtggcagtgtttcaggt
ctcaccctcaaactcatccgaacgtctgttagcacgatgctggacaccctgtctgacgat
gactacgtgaacgtggtctatttcaacgaaaaggccttgtccgcggcgtgctttcagaac
ctggtgcaggccaatgtccgcaacaagaggattctcaaagatgcggtgcagaacatcatt
gctaaaggtgtcaccagataccaagatggcttcaagctggccttcaagcagctcgcgcag
atggatgtggcaagggctaactgtaacaagattatcatgctcttcactgacggaggagag
gaaagggcagaggagatctttaaagaacacaacccaaagcaagaggtgcgcatcttcaca
ttttcagtaggtcaacacaactacgacaaaggaccaatacagtggatggcctgtactaat
aaaggctactactatgagatcccatctataggcgccattaggatcaacactcaggagtac
ctggatgttttgggcaggcccatggtcaaggctnncccaaaaaaggccaagcaagttcag
tggaccaatgtctacctggatgcactggagcttggcctggtgatcactggaactctgcct
gtcttcaacaagaccagcacaggctcaaagaaatcacaaaaccagctcatcttgggggtc
atggctattgatgtctccctggaagatatcaagagactcacacctcggtttacttttgga
ccaaatggttattactttgccattgaccccaacggatatgtcctgctccatcctaatctc
cagccactgactgccaagtttgatgaacctgtaacactggacttcctggatgctgagata
gagaatgagatcaaagagacgataagagaagaaatgatcaacgcaagtacaggaaattac
acaatatttacattggtgaaatcccaagatgagcgctatatggaccaaggttggaggacg
tatacgtttgcaccagtaaaggggtcagattacagcctggccctggtccttcccgagtac
agtatgcattacatccgggccacaataggtgacacaatcacccaggcaaaattttctgaa
agcctgctggcagacaagtttgatgaatacggctatacatttattgcaccgagggtgtac
tgtaaggacttgaagccacccaacaagaataaaaacaacacagagttcctcatggagttc
aacaattacattgacacgaagactccaaacaaccccatgtgtaatgtggagctggtgaac
cgcctgctcctggatgctggcatcacctcggacctgatcaagctttggaaacaaaacgag
ttgcagcctggtgtctcggccagatttgttgccactgacggaggaatcacaagggtctac
cccaaaagtgctgggttttattggaaagaagaggcagagacgtatgagtcaagtttctat
aagcgaagtttggacaatgatctgtacatcttcactccaacaccctaccccaacaaagag
aacacaactgatgactcaatcctggtgagcagagcagtaaacctcaatattgatggtatc
aatcttaaaccagctgtggtcggcgtgaagttagacatcagtgcctggatggcaagattc
atcaacgctactgtcaagactaactgcaacggtgagatgtgtggctgtcagagaaatgat
gcctacgtggactgtatcattctggatgatgggggcttcctggtgatgtccaatcaagat
aagtatattgatcagattggaagtttctttggcgttatcgaccccaccctcatgagaaag
ctgaatgactccctgttcacccttaagcagacctacgactaccagtcgctctgtgacccc
aagaaagagagcaaggcggctgcgggcccgcgatccgtctacgtgcccacaatagcagat
attttgaatttaggttggtgggcgacagctgcagcctggtcactattgcaacagatactg
gtcagcatcacattccccagtttcatggatgcagctgaaatggatgatgaagtgtcagat
gccatgctgaaagaggtctgcatcaccaagcagactcaatattactttatgaacaacaac
ctgtctttcagaggcaccatcgactgcgaaaactgctccaggctctaccacgctgaaaag
ctgcccaagacaaacctggtctttatcatcactgatgcaaaactcacctgcttaccctgt
gacgccaccctgttgaaacaggaagaggagcagtctgaaggtcctgatccctgtgagcta
gctaaaaaacctcggtacaggaaagggccctcagagtgttttgataacaatgaacatgag
gacgacgctgattgtggtggggcatccagcttgagtccctcactttggcttatggtggcc
cttcagctggtgctgctctgggttctgactggctccagaaactacgccgtctcatcatga
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