Lates calcarifer (barramundi perch): 108879822
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Entry
108879822 CDS
T04895
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase RNF34
KO
K20804
E3 ubiquitin-protein ligase RNF34 [EC:
2.3.2.31
]
Organism
lcf
Lates calcarifer (barramundi perch)
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lcf04121
]
108879822
Enzymes [BR:
lcf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108879822
Ubiquitin system [BR:
lcf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108879822
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
FYVE_CARP1-2
ARMET_C
PI3K_1B_p101
Prok-RING_4
Paf1
DUF4518
zf-RING_5
DUF2457
DNApol_Exo
Nop14
CDC45
Sporozoite_P67
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
108879822
NCBI-ProteinID:
XP_018526736
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All DBs
Position
LG9:10215712..10233280
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AA seq
456 aa
AA seq
DB search
MLTPHTQGSRREGRRNGLIPLCTCDGRRSDITRQFPQTGGAMKAGASSMWASCCGLLNEV
MGTGTVRTQQPGFGAGAGPFRFAPSAGYSTYPPTSSGSAGQLCKACGLAFSVFRRKHICC
DCKKSFCALCSVLQENLRCCTTCHLLRGTAFQRPRLMQLRVKDLRQYLLLRNIPTDTCRE
KEDLVDLVLCHQGARETQRAAVVEEEDEEEEEEEEEEEDARGEEREEEEEEEEDEGEDTD
SLHSLPHSHAASPPSATRSTSEQSVLSASQGDVLSPSDSSGTTSQEHEDTPTASLLNLEP
TENIIEVSPATQRRIRASLSDLDNEEAIENLSVRQLKEILARNFVNYSGCCEKWELLERV
HRLYRENEQNRKSMENVSITAVVAYPPPLCNSGVGDGVKAQLAADENLCRICMDAIIDCV
LLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgcttactccacacacacagggcagtcggagagagggaagacgtaatggtttgattccc
ctgtgcacttgcgatggtcgtcgttctgacattactcggcaatttcctcaaacgggaggc
gcaatgaaggcgggggcgtcgtccatgtgggcgtcatgctgcggactgctgaacgaggtg
atgggcacgggcacggtgcggacgcagcaaccagggttcggggcaggggcggggcccttc
cgctttgcccccagcgctgggtactccacctacccccccaccagctcagggagcgccgga
cagctgtgcaaggcctgcggactggccttctctgtcttcagacgcaagcacatctgctgt
gattgtaagaagagtttctgcgccctgtgctcggtgctgcaggagaacctgcgctgctgc
acgacctgccacctgctgcgcggcacggccttccagcggccccggctcatgcagctccgg
gtgaaggacctgcgccagtacttgctgctgcgcaacatccccaccgacacgtgcagggag
aaagaggacctggtggacctggtgctctgccatcagggggcaagggaaacccagagggca
gcggtggtggaggaagaggacgaggaagaagaggaggaggaggaggaggaagaggacgca
cgtggggaggagagagaggaggaggaggaggaggaggaggatgaaggggaggatacagac
agtctgcactcgctcccccactcgcatgccgcctcacccccctccgccacgcgctccacc
tctgagcagtcggtcctctctgcctctcagggagacgtgctcagcccaagtgacagctca
gggaccaccagccaggagcatgaggatactccaacagcgtccctcttgaacctggagccc
actgaaaatatcatagaggtcagtccggcaacacagaggaggatcagggcctcgctgtct
gatctggacaatgaggaggcgatagagaacctgtccgtccgccagctgaaagagattctc
gccaggaactttgtcaattactcgggctgctgcgagaagtgggagctgctggagcgagtg
catcgactctacagagaaaatgagcagaacaggaaatccatggaaaatgtgagcataact
gcagtggttgcatatcctccacctctctgcaacagtggagttggagatggtgtcaaagct
cagctggcggctgacgaaaacttgtgtcgcatctgcatggacgctatcatcgactgcgtg
ctgctggaatgtggtcacatggttacctgcaccaaatgtgggaagaggatgagcgagtgc
cccatctgcaggcagtacgtagtgcgggccgtgcacgtcttcaagtcttaa
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