Lates calcarifer (barramundi perch): 108880568
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Entry
108880568 CDS
T04895
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lcf
Lates calcarifer (barramundi perch)
Pathway
lcf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108880568
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcf03041
]
108880568
Enzymes [BR:
lcf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108880568
Spliceosome [BR:
lcf03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108880568
Complex B
108880568
Complex C
U2 SnRNP specific factors
108880568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
108880568
NCBI-ProteinID:
XP_018527647
UniProt:
A0A4W6CK79
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All DBs
Position
LG11:complement(3561303..3568563)
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AA seq
903 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFSLAGKKEEPQLTQKSHTSFGASGSSGGYGKSQQLPSFYKIG
TKRANFDEENAYFEDDEEESSSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
ENQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTQEEEEENIDY
DSDGNPIASTTKKIIMPLPPIDHSEIDYAPFEKNFYDEHEELSSLTGTQVLELRHKLNLR
VSGAAPPKPCTSFAHFSFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEAGEGPIAVIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDVTQVVELLLSGT
DKWAWLTRRLVEFTSSGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVIS
DFKKKNLPILVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLL
TSKDTTFAGDLVRNLEGANQAVSKELMDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGYRE
RPGLGAESSERSSSSLLSSTSSFEGYSKPATGAMGDRMSAMKQAFQAQYKSHFVAASSGP
PKLSTKSSSSSGWTSAGSLSSVPTEAANGSERSHSAMLSMSSFTSAGSLSTVPTSQPSSQ
HNYPPPAPPSQRDSSRDRYSEDRGRHGDSHHRHSDRSDRHSGEDRYSDRGDRDRHGDRDR
DRHGDRDRYSGSRHSDSRNGDGSRRDRDDRRSDRDGGDRGSDRGDDSFAVPEPPKRRKSR
WDN
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgtgaagcgagggtttgggtttgggggattttcc
cttgcaggtaaaaaagaggaacctcaacttactcaaaaatctcacacatcattcggagcc
tctggatcaagtgggggatatgggaagagccagcagctcccatcattctacaaaatagga
acaaaaagagcaaactttgatgaggaaaatgcgtattttgaagatgatgaagaggagtcc
agcagcaatgtggatctgccgtacatccctgctgagaattcacccacacggcagcagatg
cagtctggtggtggctcagacagtgaggatgacccactggatgccttcatggcagaggtt
gagaaccaagcagccaaagacatgaagaaactagaggaaaaggagaaggagaaaaagtcc
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctac
atggcagagaatcccacagccgggctgactcaggaggaggaggaggaaaacattgactat
gacagtgacgggaacccaattgcctctaccaccaagaaaatcatcatgccgctccctcct
attgaccactcagagattgattacgcaccctttgaaaaaaacttttatgatgagcacgag
gagctcagcagcctgactggaacgcaagtgttggagttaaggcataaactgaacttgcgg
gtatctggtgctgcccctccaaaaccttgcaccagctttgcccacttcagctttgatgag
cagctaatgcaccaaatccgcaagtctgagtacactcagcccacaccaattcagtgccag
ggtgtgcctatagctctgtctggacgtgacatgattggtattgcaaaaactggaagtggc
aaaactgcagcttttatctggccaatgctggttcatatcatggaccaaaaggagttggaa
gcaggagagggaccgatcgctgttatcgtgtgtcccaccagagagctgtgtcaacagatc
catgcagagtgtaagcgctttgggaaagcctactcattgcgttctgtggcagtttatgga
ggaggcagcatgtgggagcaggccaaggctctgcaggagggggcagagatcgtggtgtgc
actccgggtcgtctgattgaccatgttaaaaagaaggccacgtccctgcagagagtgaca
tacttggtgtttgatgaggcagatcgcatgtttgatatgggctttgaatatcaggtcaga
tctattgctagccatgtccgcccagacagacagactcttctgttcagtgctacatttcga
aagaagattgagaggctggcccgagacatcttgatagatcctatccgtgtggtgcaggga
gacataggagaggccaatgaggatgtgacccaggttgttgagctgctgctcagcgggaca
gataaatgggcctggctgacccggcggctggtcgagttcacctcctccggctccgtcctc
atcttcgtcaccaagaaggcaaactgtgaggagctggccactaacctgacacaggagggt
tacagccttggcctcctgcatggagacatggaccagagtgagaggaacaaggtcatcagt
gacttcaagaagaagaatttgcccattctggtggccactgatgtagctgctcgtggtctg
gacatcccatccattcgcacagtggtaaactacgatgtggcacgagacatcgacacacac
acacacaggatcggtcgaactggccgtgccggagagaagggcgtagcttacactctcctc
accagcaaagacaccacattcgctggagaccttgtgagaaatctggagggagctaatcaa
gctgtttctaaagaactgatggatttagccatgcagaatccatggtttaggaaatccaga
ttcaagggtggtaaaggaaagaagctgaatattggtggaggtggtcttggttacagagag
agaccaggcctgggggctgaaagctctgaacgcagtagcagcagtttattgtcttccact
agtagctttgagggctacagcaaaccagccactggggcgatgggagatcgcatgtctgca
atgaaacaagctttccaggctcagtataagagtcactttgtggctgcgtccagcggccct
cctaagctcagcaccaagtctagcagctcatcaggctggacgagtgccggcagtctgagc
tctgtgccgacagaggctgccaatggctcagaaaggtcccattctgccatgttgtcaatg
tccagtttcaccagcgccggttccctgagcacagtgcccaccagtcaacccagttcacag
cacaactaccctcctcctgcacctccctcacagagagatagctcacgggacagatatagt
gaggaccgggggcgccatggggacagccaccaccgccacagtgacaggagtgaccggcac
agtggtgaggatcgttatagtgaccgaggcgaccgagatcggcatggagacagagatcgc
gatcgccacggggaccgggatcgctacagtggcagccgccacagcgacagccgtaatgga
gatggaagcaggagggacagagatgatcggaggagtgacagggatgggggagacaggggg
agtgacagaggagatgatagctttgctgtccctgaaccaccaaagcgtagaaagagcagg
tgggacaactga
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